miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31997 3' -58.6 NC_006949.1 + 9232 0.66 0.447848
Target:  5'- cUCGAU-GCaGCCAGuCGGCGGCaucacCGCc -3'
miRNA:   3'- uAGUUGuCG-CGGUC-GCCGCCGau---GCG- -5'
31997 3' -58.6 NC_006949.1 + 16292 0.66 0.447848
Target:  5'- -aCGGCGGCcggaGCCcaagcagaugcGGCGGCGGUUGCc- -3'
miRNA:   3'- uaGUUGUCG----CGG-----------UCGCCGCCGAUGcg -5'
31997 3' -58.6 NC_006949.1 + 14461 0.67 0.409473
Target:  5'- -gCGGCAGauaagcguugcuCGgCAGCGGCGGCauucaucGCGCu -3'
miRNA:   3'- uaGUUGUC------------GCgGUCGCCGCCGa------UGCG- -5'
31997 3' -58.6 NC_006949.1 + 31295 0.67 0.409473
Target:  5'- ---cGCGGCGUUGGCGGCGGauaACGa -3'
miRNA:   3'- uaguUGUCGCGGUCGCCGCCga-UGCg -5'
31997 3' -58.6 NC_006949.1 + 6306 0.67 0.409473
Target:  5'- ------cGCGCCugcAGCGGCGGCagugccaACGCg -3'
miRNA:   3'- uaguuguCGCGG---UCGCCGCCGa------UGCG- -5'
31997 3' -58.6 NC_006949.1 + 5955 0.7 0.235789
Target:  5'- -aCGGCAGUGCCuggcaguaguucuGCGGCGGUgaUACGg -3'
miRNA:   3'- uaGUUGUCGCGGu------------CGCCGCCG--AUGCg -5'
31997 3' -58.6 NC_006949.1 + 7798 0.71 0.208823
Target:  5'- aAUUAGCAGCGCCGuuGCgGGCGGgUAaugUGCa -3'
miRNA:   3'- -UAGUUGUCGCGGU--CG-CCGCCgAU---GCG- -5'
31997 3' -58.6 NC_006949.1 + 14381 0.76 0.093434
Target:  5'- cUCGucCAGCGCCcGUucuuuugcgacGGCGGCUGCGCg -3'
miRNA:   3'- uAGUu-GUCGCGGuCG-----------CCGCCGAUGCG- -5'
31997 3' -58.6 NC_006949.1 + 14490 1.1 0.000282
Target:  5'- uAUCAACAGCGCCAGCGGCGGCUACGCg -3'
miRNA:   3'- -UAGUUGUCGCGGUCGCCGCCGAUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.