miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32003 5' -55.5 NC_006949.1 + 45480 0.66 0.629807
Target:  5'- cGGaguCUGCCAGUCuggggcgggauGcauuauccacgcugGCGGCGGAGGUGg -3'
miRNA:   3'- aCC---GAUGGUCAG-----------U--------------CGUCGCCUUCACa -5'
32003 5' -55.5 NC_006949.1 + 46482 0.67 0.540346
Target:  5'- aGGCUGCCAGaCGGUgcugcucuucgauaAGCGGcugacGGUGg -3'
miRNA:   3'- aCCGAUGGUCaGUCG--------------UCGCCu----UCACa -5'
32003 5' -55.5 NC_006949.1 + 33446 0.67 0.52181
Target:  5'- aUGGC--CCAGccCGGCAGCgauGGAGGUGa -3'
miRNA:   3'- -ACCGauGGUCa-GUCGUCG---CCUUCACa -5'
32003 5' -55.5 NC_006949.1 + 35017 0.69 0.428564
Target:  5'- cUGGCgACCAGUCAGCGGCa------- -3'
miRNA:   3'- -ACCGaUGGUCAGUCGUCGccuucaca -5'
32003 5' -55.5 NC_006949.1 + 18381 0.7 0.375741
Target:  5'- aGGCaACCAGUaccaggcuuacccgaUAGCAGUGGAAGg-- -3'
miRNA:   3'- aCCGaUGGUCA---------------GUCGUCGCCUUCaca -5'
32003 5' -55.5 NC_006949.1 + 35098 0.7 0.36324
Target:  5'- cUGGCgACCAGUCAGCAGCa------- -3'
miRNA:   3'- -ACCGaUGGUCAGUCGUCGccuucaca -5'
32003 5' -55.5 NC_006949.1 + 14218 0.7 0.354489
Target:  5'- cGGCUACCcauaacAG-CAGCAGCGGcGGUc- -3'
miRNA:   3'- aCCGAUGG------UCaGUCGUCGCCuUCAca -5'
32003 5' -55.5 NC_006949.1 + 34856 0.78 0.107155
Target:  5'- cUGGCUACCAGUCAGCAGCa------- -3'
miRNA:   3'- -ACCGAUGGUCAGUCGUCGccuucaca -5'
32003 5' -55.5 NC_006949.1 + 34910 0.78 0.107155
Target:  5'- cUGGCUACCAGUCAGCAGCa------- -3'
miRNA:   3'- -ACCGAUGGUCAGUCGUCGccuucaca -5'
32003 5' -55.5 NC_006949.1 + 34829 1.07 0.000913
Target:  5'- cUGGCUACCAGUCAGCAGCGGAAGUGUc -3'
miRNA:   3'- -ACCGAUGGUCAGUCGUCGCCUUCACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.