miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32004 3' -56 NC_006949.1 + 45466 0.66 0.617543
Target:  5'- cUGG--GGCGGgAugCAuuauccACGCUGGCGGc -3'
miRNA:   3'- -ACCagUCGCCgUugGU------UGUGACCGCU- -5'
32004 3' -56 NC_006949.1 + 22332 0.66 0.60527
Target:  5'- aGGUCAGCagagaacaagccuGGCGuCCAgauaACACUGGaUGGu -3'
miRNA:   3'- aCCAGUCG-------------CCGUuGGU----UGUGACC-GCU- -5'
32004 3' -56 NC_006949.1 + 28370 0.67 0.551115
Target:  5'- uUGGUUAGUaaaGaGCAGCCGGCGCcGGUa- -3'
miRNA:   3'- -ACCAGUCG---C-CGUUGGUUGUGaCCGcu -5'
32004 3' -56 NC_006949.1 + 41408 0.67 0.529411
Target:  5'- cUGG-CAGCGGgAaauuACC--UACUGGCGAc -3'
miRNA:   3'- -ACCaGUCGCCgU----UGGuuGUGACCGCU- -5'
32004 3' -56 NC_006949.1 + 15967 0.67 0.517608
Target:  5'- cGGUaCAGCGGCAuucuUCAGCGCaagagcauuaucgUGcGCGAu -3'
miRNA:   3'- aCCA-GUCGCCGUu---GGUUGUG-------------AC-CGCU- -5'
32004 3' -56 NC_006949.1 + 23016 0.68 0.497476
Target:  5'- cUGGUCGGCGGCAACgAGaGCaGuaGAu -3'
miRNA:   3'- -ACCAGUCGCCGUUGgUUgUGaCcgCU- -5'
32004 3' -56 NC_006949.1 + 24220 0.68 0.475644
Target:  5'- cGGUUGGUGGUguuucGGCCAGCAUUGuucucauGCGAg -3'
miRNA:   3'- aCCAGUCGCCG-----UUGGUUGUGAC-------CGCU- -5'
32004 3' -56 NC_006949.1 + 18176 0.68 0.45631
Target:  5'- -cGUCAGUGGUGG--GACACUGGCGc -3'
miRNA:   3'- acCAGUCGCCGUUggUUGUGACCGCu -5'
32004 3' -56 NC_006949.1 + 3404 0.69 0.446305
Target:  5'- aGGUCuacGCGGCGagACUGACAUcgGGCGu -3'
miRNA:   3'- aCCAGu--CGCCGU--UGGUUGUGa-CCGCu -5'
32004 3' -56 NC_006949.1 + 34926 0.83 0.046384
Target:  5'- ---gUAGCGGCAACCAACACUGGCu- -3'
miRNA:   3'- accaGUCGCCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 34847 0.84 0.041187
Target:  5'- -aGUCAGCaGCAACCAACACUGGCu- -3'
miRNA:   3'- acCAGUCGcCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 34901 0.85 0.035487
Target:  5'- -aGUCAGCaGCAACCAACACUGGCa- -3'
miRNA:   3'- acCAGUCGcCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 35089 0.85 0.035487
Target:  5'- -aGUCAGCaGCAACCAACACUGGCa- -3'
miRNA:   3'- acCAGUCGcCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 35008 0.95 0.007196
Target:  5'- -aGUCAGCGGCAACCAACACUGGCa- -3'
miRNA:   3'- acCAGUCGCCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 35037 0.99 0.003373
Target:  5'- cUGGUCAGCaGCAACCAACACUGGCGAc -3'
miRNA:   3'- -ACCAGUCGcCGUUGGUUGUGACCGCU- -5'
32004 3' -56 NC_006949.1 + 34876 1.02 0.00214
Target:  5'- cUGGUCAGCGGCAACCAACACUGGCu- -3'
miRNA:   3'- -ACCAGUCGCCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 34983 1.03 0.001839
Target:  5'- cUGGUCAGCGGCAACCAACACUGGCa- -3'
miRNA:   3'- -ACCAGUCGCCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 35064 1.03 0.001839
Target:  5'- cUGGUCAGCGGCAACCAACACUGGCa- -3'
miRNA:   3'- -ACCAGUCGCCGUUGGUUGUGACCGcu -5'
32004 3' -56 NC_006949.1 + 34956 1.08 0.000675
Target:  5'- cUGGUCAGCGGCAACCAACACUGGCGAc -3'
miRNA:   3'- -ACCAGUCGCCGUUGGUUGUGACCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.