miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32004 5' -52.2 NC_006949.1 + 16259 0.66 0.80676
Target:  5'- cGCAACCAuggguaGCGCa-GCUGCUguuGGUCAGa -3'
miRNA:   3'- cCGUUGGU------UGUGacCGAUGG---UCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 28289 0.66 0.79678
Target:  5'- uGGCAcuACCGGCGCcGGCUGCUcuUUAc -3'
miRNA:   3'- -CCGU--UGGUUGUGaCCGAUGGucAGUc -5'
32004 5' -52.2 NC_006949.1 + 19169 0.67 0.776274
Target:  5'- gGGCuuCCgugGugGCUGGCUugCGGUg-- -3'
miRNA:   3'- -CCGuuGG---UugUGACCGAugGUCAguc -5'
32004 5' -52.2 NC_006949.1 + 14682 0.68 0.688828
Target:  5'- uGGCAGCCAcCAUUGGCaaguuaaGCCAGa--- -3'
miRNA:   3'- -CCGUUGGUuGUGACCGa------UGGUCaguc -5'
32004 5' -52.2 NC_006949.1 + 34317 0.68 0.688828
Target:  5'- gGGCAGCCAGCAaugGGCcacCCGG-CAa -3'
miRNA:   3'- -CCGUUGGUUGUga-CCGau-GGUCaGUc -5'
32004 5' -52.2 NC_006949.1 + 14755 0.69 0.654712
Target:  5'- uGGCuuaacuuGCCAAUGgUGGCUGCCAacUCGGu -3'
miRNA:   3'- -CCGu------UGGUUGUgACCGAUGGUc-AGUC- -5'
32004 5' -52.2 NC_006949.1 + 3735 0.7 0.597548
Target:  5'- cGGCGuuCCAGCGCaucGGCU-CCuGUCGGa -3'
miRNA:   3'- -CCGUu-GGUUGUGa--CCGAuGGuCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 39952 0.7 0.586169
Target:  5'- aGGCGuUCAGCcUUGGCUguACCuGUCAGg -3'
miRNA:   3'- -CCGUuGGUUGuGACCGA--UGGuCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 28357 0.74 0.350376
Target:  5'- aGCAGCCGGCGCcGGUagUGCCAG-CGGa -3'
miRNA:   3'- cCGUUGGUUGUGaCCG--AUGGUCaGUC- -5'
32004 5' -52.2 NC_006949.1 + 35110 0.79 0.179772
Target:  5'- aGCAgAUCAugACUGGCgACCAGUCAGc -3'
miRNA:   3'- cCGU-UGGUugUGACCGaUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 35082 0.9 0.035167
Target:  5'- aGCAACCAACACUGGCaACUGGUCAGn -3'
miRNA:   3'- cCGUUGGUUGUGACCGaUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 34894 0.9 0.035167
Target:  5'- aGCAACCAACACUGGCaACUGGUCAGn -3'
miRNA:   3'- cCGUUGGUUGUGACCGaUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 34948 0.91 0.028384
Target:  5'- cGGCAACCAACACUGGCgACCAGUa-- -3'
miRNA:   3'- -CCGUUGGUUGUGACCGaUGGUCAguc -5'
32004 5' -52.2 NC_006949.1 + 35056 0.95 0.013979
Target:  5'- cGGCAACCAACACUGGCaACUGGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGaUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 35002 0.95 0.013979
Target:  5'- cGGCAACCAACACUGGCaACUGGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGaUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 34975 0.95 0.013979
Target:  5'- cGGCAACCAACACUGGCaACUGGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGaUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 35028 0.97 0.010261
Target:  5'- aGCAACCAACACUGGCgACCAGUCAGc -3'
miRNA:   3'- cCGUUGGUUGUGACCGaUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 34840 1.06 0.00254
Target:  5'- aGCAACCAACACUGGCUACCAGUCAGc -3'
miRNA:   3'- cCGUUGGUUGUGACCGAUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 34868 1.11 0.001132
Target:  5'- cGGCAACCAACACUGGCUACCAGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGAUGGUCAGUC- -5'
32004 5' -52.2 NC_006949.1 + 34922 1.11 0.001132
Target:  5'- cGGCAACCAACACUGGCUACCAGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGAUGGUCAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.