miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32005 3' -53.4 NC_006949.1 + 14485 0.66 0.716581
Target:  5'- aCAGcgcCAGCGGCGGCU-ACGCgagcGGCAGa -3'
miRNA:   3'- -GUCa--GUCGUCGUUGGuUGUGa---CCGUU- -5'
32005 3' -53.4 NC_006949.1 + 18176 0.66 0.716581
Target:  5'- -cGUCAGUGGUGG--GACACUGGCGc -3'
miRNA:   3'- guCAGUCGUCGUUggUUGUGACCGUu -5'
32005 3' -53.4 NC_006949.1 + 6299 0.66 0.69383
Target:  5'- gCAG-CGGCGGCAguGCCAACGC--GCAu -3'
miRNA:   3'- -GUCaGUCGUCGU--UGGUUGUGacCGUu -5'
32005 3' -53.4 NC_006949.1 + 22332 0.66 0.682349
Target:  5'- aGGUCAGCAGagAACaAGC-CUGGCGu -3'
miRNA:   3'- gUCAGUCGUCg-UUGgUUGuGACCGUu -5'
32005 3' -53.4 NC_006949.1 + 14678 0.67 0.636015
Target:  5'- gAGUUGGCAGCcACCA---UUGGCAAg -3'
miRNA:   3'- gUCAGUCGUCGuUGGUuguGACCGUU- -5'
32005 3' -53.4 NC_006949.1 + 45471 0.67 0.624391
Target:  5'- cCAGUCuggGGCGGgAugCAuuauccACGCUGGCGg -3'
miRNA:   3'- -GUCAG---UCGUCgUugGU------UGUGACCGUu -5'
32005 3' -53.4 NC_006949.1 + 15766 0.68 0.555185
Target:  5'- gCAGUUAGCccaauGCAAUCAACuaUGGCAGa -3'
miRNA:   3'- -GUCAGUCGu----CGUUGGUUGugACCGUU- -5'
32005 3' -53.4 NC_006949.1 + 11612 0.69 0.488391
Target:  5'- ---gCAGCAGCAucACUAACACUGGa-- -3'
miRNA:   3'- gucaGUCGUCGU--UGGUUGUGACCguu -5'
32005 3' -53.4 NC_006949.1 + 15646 0.7 0.475473
Target:  5'- --cUCAGCAGCGGCCugcgcuuuaaguGCAUUGGCu- -3'
miRNA:   3'- gucAGUCGUCGUUGGu-----------UGUGACCGuu -5'
32005 3' -53.4 NC_006949.1 + 14236 0.72 0.367895
Target:  5'- uCAGUCAGCAGCAGa-GAUGCaGGCGg -3'
miRNA:   3'- -GUCAGUCGUCGUUggUUGUGaCCGUu -5'
32005 3' -53.4 NC_006949.1 + 28369 0.72 0.367895
Target:  5'- uGGUUAGUaaagAGCAGCCGGCGCcGGUAGu -3'
miRNA:   3'- gUCAGUCG----UCGUUGGUUGUGaCCGUU- -5'
32005 3' -53.4 NC_006949.1 + 16163 0.74 0.269441
Target:  5'- gGGUCAgGCAGCuGCCGcugcauCACUGGCAu -3'
miRNA:   3'- gUCAGU-CGUCGuUGGUu-----GUGACCGUu -5'
32005 3' -53.4 NC_006949.1 + 34929 0.87 0.033792
Target:  5'- cCAG-UAGCGGCAACCAACACUGGCu- -3'
miRNA:   3'- -GUCaGUCGUCGUUGGUUGUGACCGuu -5'
32005 3' -53.4 NC_006949.1 + 34875 0.97 0.006028
Target:  5'- uGGUCAGCGGCAACCAACACUGGCu- -3'
miRNA:   3'- gUCAGUCGUCGUUGGUUGUGACCGuu -5'
32005 3' -53.4 NC_006949.1 + 34955 1.01 0.003209
Target:  5'- uGGUCAGCGGCAACCAACACUGGCGAc -3'
miRNA:   3'- gUCAGUCGUCGUUGGUUGUGACCGUU- -5'
32005 3' -53.4 NC_006949.1 + 34849 1.01 0.003013
Target:  5'- cCAGUCAGCAGCAACCAACACUGGCu- -3'
miRNA:   3'- -GUCAGUCGUCGUUGGUUGUGACCGuu -5'
32005 3' -53.4 NC_006949.1 + 35036 1.01 0.003013
Target:  5'- uGGUCAGCAGCAACCAACACUGGCGAn -3'
miRNA:   3'- gUCAGUCGUCGUUGGUUGUGACCGUU- -5'
32005 3' -53.4 NC_006949.1 + 34982 1.02 0.002919
Target:  5'- uGGUCAGCGGCAACCAACACUGGCAAc -3'
miRNA:   3'- gUCAGUCGUCGUUGGUUGUGACCGUU- -5'
32005 3' -53.4 NC_006949.1 + 35063 1.02 0.002919
Target:  5'- uGGUCAGCGGCAACCAACACUGGCAAc -3'
miRNA:   3'- gUCAGUCGUCGUUGGUUGUGACCGUU- -5'
32005 3' -53.4 NC_006949.1 + 35010 1.04 0.001818
Target:  5'- cCAGUCAGCGGCAACCAACACUGGCAAc -3'
miRNA:   3'- -GUCAGUCGUCGUUGGUUGUGACCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.