miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32005 5' -51.8 NC_006949.1 + 37825 0.66 0.838806
Target:  5'- uGGCAAgCAGCACUuuaaaauGUcGCUuGGUCAGa -3'
miRNA:   3'- -CCGUUgGUUGUGAc------CGuUGA-CCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 10700 0.67 0.80031
Target:  5'- uGGCGGCCcguaaGCUGGUca-UGGUCAu -3'
miRNA:   3'- -CCGUUGGuug--UGACCGuugACCAGUc -5'
32005 5' -51.8 NC_006949.1 + 16259 0.67 0.790178
Target:  5'- cGCAACCAugGgUaGcGCAGCugcuguUGGUCAGa -3'
miRNA:   3'- cCGUUGGUugUgA-C-CGUUG------ACCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 28966 0.67 0.779867
Target:  5'- uGGCGcguaUAGCGCUGGCAucGCUGGa--- -3'
miRNA:   3'- -CCGUug--GUUGUGACCGU--UGACCaguc -5'
32005 5' -51.8 NC_006949.1 + 14682 0.67 0.758758
Target:  5'- uGGCAGCCAcCAUUGGCAAgUuaaGcCAGa -3'
miRNA:   3'- -CCGUUGGUuGUGACCGUUgAc--CaGUC- -5'
32005 5' -51.8 NC_006949.1 + 34855 0.68 0.735989
Target:  5'- uGGUAGCCAGugUUGGUugccgcuGACUGGUCGc -3'
miRNA:   3'- -CCGUUGGUUguGACCG-------UUGACCAGUc -5'
32005 5' -51.8 NC_006949.1 + 35110 0.68 0.703748
Target:  5'- aGCAgAUCAugACUGGCGACcaGUCAGc -3'
miRNA:   3'- cCGU-UGGUugUGACCGUUGacCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 33358 0.68 0.702623
Target:  5'- ---uACCAGCacgACUGGCAauuauugGCUGGUCAc -3'
miRNA:   3'- ccguUGGUUG---UGACCGU-------UGACCAGUc -5'
32005 5' -51.8 NC_006949.1 + 10397 0.72 0.510075
Target:  5'- uGGCAGCCGACGCUGccauuucagcaaaGCAACgGG-CAu -3'
miRNA:   3'- -CCGUUGGUUGUGAC-------------CGUUGaCCaGUc -5'
32005 5' -51.8 NC_006949.1 + 43668 0.72 0.478879
Target:  5'- ---uGCCAuuGCACUGGCAugcgUUGGUCAGa -3'
miRNA:   3'- ccguUGGU--UGUGACCGUu---GACCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 6125 0.76 0.310424
Target:  5'- uGGuCAAUUcACACUGGCAACUGGUg-- -3'
miRNA:   3'- -CC-GUUGGuUGUGACCGUUGACCAguc -5'
32005 5' -51.8 NC_006949.1 + 34840 0.79 0.185712
Target:  5'- aGCAACCAACACUGGCuACcaGUCAGc -3'
miRNA:   3'- cCGUUGGUUGUGACCGuUGacCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 34948 0.81 0.156642
Target:  5'- cGGCAACCAACACUGGCGAC----CAGu -3'
miRNA:   3'- -CCGUUGGUUGUGACCGUUGaccaGUC- -5'
32005 5' -51.8 NC_006949.1 + 34922 0.84 0.087232
Target:  5'- cGGCAACCAACACUGGCuACcaGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGuUGacCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 34868 0.84 0.087232
Target:  5'- cGGCAACCAACACUGGCuACcaGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGuUGacCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 35028 0.86 0.068641
Target:  5'- aGCAACCAACACUGGCGACcaGUCAGn -3'
miRNA:   3'- cCGUUGGUUGUGACCGUUGacCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 35082 1.05 0.003134
Target:  5'- aGCAACCAACACUGGCAACUGGUCAGn -3'
miRNA:   3'- cCGUUGGUUGUGACCGUUGACCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 34894 1.06 0.002767
Target:  5'- aGCAACCAACACUGGCAACUGGUCAGc -3'
miRNA:   3'- cCGUUGGUUGUGACCGUUGACCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 34975 1.11 0.00123
Target:  5'- cGGCAACCAACACUGGCAACUGGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGUUGACCAGUC- -5'
32005 5' -51.8 NC_006949.1 + 35002 1.11 0.00123
Target:  5'- cGGCAACCAACACUGGCAACUGGUCAGc -3'
miRNA:   3'- -CCGUUGGUUGUGACCGUUGACCAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.