miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32006 3' -49.4 NC_006949.1 + 39161 0.72 0.680388
Target:  5'- cGGGUGGCAagCUCUCGAUgcuggcgUGAGGGc -3'
miRNA:   3'- -CCUAUCGUgaGGGAGUUAa------ACUCCCu -5'
32006 3' -49.4 NC_006949.1 + 37953 0.73 0.587576
Target:  5'- -aAUGGCguaUCCCUCAAaaUGAGGGAa -3'
miRNA:   3'- ccUAUCGug-AGGGAGUUaaACUCCCU- -5'
32006 3' -49.4 NC_006949.1 + 38031 0.74 0.541809
Target:  5'- gGGAUu---UUCCCUCAuUUUGAGGGAu -3'
miRNA:   3'- -CCUAucguGAGGGAGUuAAACUCCCU- -5'
32006 3' -49.4 NC_006949.1 + 37995 0.79 0.290365
Target:  5'- gGGAUAaaACaUCCCUCAAaUUGAGGGAg -3'
miRNA:   3'- -CCUAUcgUG-AGGGAGUUaAACUCCCU- -5'
32006 3' -49.4 NC_006949.1 + 38078 1.12 0.002042
Target:  5'- gGGAUAGCACUCCCUCAAUUUGAGGGAu -3'
miRNA:   3'- -CCUAUCGUGAGGGAGUUAAACUCCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.