miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32008 3' -57 NC_006949.1 + 43580 0.66 0.582202
Target:  5'- gUACGGCUGCCCgaugcuuuUCAuCGUCauuaccucGGCAUCGAu -3'
miRNA:   3'- -GUGUUGGCGGG--------AGU-GCGG--------UCGUAGCU- -5'
32008 3' -57 NC_006949.1 + 19367 0.66 0.54957
Target:  5'- aACAACaUGCCuCUCAacggcuucCGCCAGgUAUCGAc -3'
miRNA:   3'- gUGUUG-GCGG-GAGU--------GCGGUC-GUAGCU- -5'
32008 3' -57 NC_006949.1 + 9308 0.67 0.476031
Target:  5'- gGCGgugauGCCGCCgaCugGCU-GCAUCGAg -3'
miRNA:   3'- gUGU-----UGGCGGgaGugCGGuCGUAGCU- -5'
32008 3' -57 NC_006949.1 + 28513 0.69 0.398465
Target:  5'- aGCucuaCGCCgUUcCGCCAGCGUCGGu -3'
miRNA:   3'- gUGuug-GCGGgAGuGCGGUCGUAGCU- -5'
32008 3' -57 NC_006949.1 + 4588 0.69 0.398465
Target:  5'- gGCAuaguuauuucuCCGCCCaagcguaaccgCGCGCCuGCAUCGAu -3'
miRNA:   3'- gUGUu----------GGCGGGa----------GUGCGGuCGUAGCU- -5'
32008 3' -57 NC_006949.1 + 3483 0.72 0.256215
Target:  5'- gAUAACUGCCUUcUugGCCAcuGCAUCGAu -3'
miRNA:   3'- gUGUUGGCGGGA-GugCGGU--CGUAGCU- -5'
32008 3' -57 NC_006949.1 + 39247 1.08 0.000573
Target:  5'- gCACAACCGCCCUCACGCCAGCAUCGAg -3'
miRNA:   3'- -GUGUUGGCGGGAGUGCGGUCGUAGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.