miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32010 5' -49.6 NC_006949.1 + 10744 0.66 0.938645
Target:  5'- aGUCGGCACU--CUGGCuUUCUCuuucuGCGg -3'
miRNA:   3'- -CGGUCGUGAuuGACUGuAGGAGu----UGC- -5'
32010 5' -49.6 NC_006949.1 + 13680 0.66 0.938103
Target:  5'- aCCAGCGCUGaugaucuggcuaaGCUGACAaCCaUCAu-- -3'
miRNA:   3'- cGGUCGUGAU-------------UGACUGUaGG-AGUugc -5'
32010 5' -49.6 NC_006949.1 + 24486 0.66 0.921042
Target:  5'- aGCCAGCGCgguAUUG-CGUCUgaUUGGCGa -3'
miRNA:   3'- -CGGUCGUGau-UGACuGUAGG--AGUUGC- -5'
32010 5' -49.6 NC_006949.1 + 19448 0.66 0.913894
Target:  5'- cCCGGCGCUGACccuugccacgcaaUGAUucUCCUCGAa- -3'
miRNA:   3'- cGGUCGUGAUUG-------------ACUGu-AGGAGUUgc -5'
32010 5' -49.6 NC_006949.1 + 45676 0.66 0.912554
Target:  5'- aGUUAGUGCUGgcgagccucgguggGCUGACuUCCUguGCGg -3'
miRNA:   3'- -CGGUCGUGAU--------------UGACUGuAGGAguUGC- -5'
32010 5' -49.6 NC_006949.1 + 24838 0.67 0.899952
Target:  5'- -gCGGCACUGauuuuucaacugaACUGGCAUCCggUGACu -3'
miRNA:   3'- cgGUCGUGAU-------------UGACUGUAGGa-GUUGc -5'
32010 5' -49.6 NC_006949.1 + 1691 0.68 0.86937
Target:  5'- cCCAGCAgUggUUGuucuUAUCCUCGAUa -3'
miRNA:   3'- cGGUCGUgAuuGACu---GUAGGAGUUGc -5'
32010 5' -49.6 NC_006949.1 + 11691 0.68 0.860839
Target:  5'- uUCAGCACcGACUGGCAgg-UCAAUGg -3'
miRNA:   3'- cGGUCGUGaUUGACUGUaggAGUUGC- -5'
32010 5' -49.6 NC_006949.1 + 37417 0.7 0.751786
Target:  5'- uGCCAGUucuGCcAACUccuCAUCCUCGACa -3'
miRNA:   3'- -CGGUCG---UGaUUGAcu-GUAGGAGUUGc -5'
32010 5' -49.6 NC_006949.1 + 45735 1.13 0.001569
Target:  5'- cGCCAGCACUAACUGACAUCCUCAACGg -3'
miRNA:   3'- -CGGUCGUGAUUGACUGUAGGAGUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.