miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32013 3' -53.1 NC_006949.1 + 3626 0.66 0.789714
Target:  5'- uUGUCAUAGCcAGCA-GCUGU-GCGAa -3'
miRNA:   3'- cGCAGUGUCGuUUGUaCGGCGuCGCU- -5'
32013 3' -53.1 NC_006949.1 + 10666 0.66 0.769095
Target:  5'- uGCGUCugAcucGCu--CAUGCCGaGGUGAg -3'
miRNA:   3'- -CGCAGugU---CGuuuGUACGGCgUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 16308 0.66 0.769095
Target:  5'- uGCGauggaggcacUCACGGCGgccggagcccaAGCAgaUGCgGCGGCGGu -3'
miRNA:   3'- -CGC----------AGUGUCGU-----------UUGU--ACGgCGUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 14354 0.67 0.726149
Target:  5'- gGCGgcugCGC-GCAGAUcgGCgGCAGCu- -3'
miRNA:   3'- -CGCa---GUGuCGUUUGuaCGgCGUCGcu -5'
32013 3' -53.1 NC_006949.1 + 14466 0.67 0.726149
Target:  5'- cGCGa-GCGGCAGAUAagcguUGCUcgGCAGCGGc -3'
miRNA:   3'- -CGCagUGUCGUUUGU-----ACGG--CGUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 42654 0.67 0.722853
Target:  5'- uUGUCgaaauGCAGCGgauaGACAacaucaucgaaaauUGCCGCAGUGGu -3'
miRNA:   3'- cGCAG-----UGUCGU----UUGU--------------ACGGCGUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 4059 0.67 0.692842
Target:  5'- cGgGUCACucGCGAGgAuUGCCGcCAGUGAc -3'
miRNA:   3'- -CgCAGUGu-CGUUUgU-ACGGC-GUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 46602 0.68 0.670304
Target:  5'- uCGUCGCAGUAucaccgcauuAACaAUGaCCGCAGCc- -3'
miRNA:   3'- cGCAGUGUCGU----------UUG-UAC-GGCGUCGcu -5'
32013 3' -53.1 NC_006949.1 + 11771 0.68 0.670304
Target:  5'- gGCGUUcaAUAGCGA--GUGCgaUGCAGCGAu -3'
miRNA:   3'- -CGCAG--UGUCGUUugUACG--GCGUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 31136 0.68 0.636238
Target:  5'- uGCGUUcUAuGCugaagauGACGUGCCGgAGCGAg -3'
miRNA:   3'- -CGCAGuGU-CGu------UUGUACGGCgUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 16428 0.68 0.624859
Target:  5'- gGCGUUGcCAGCAGACAccCCGCcaccguaacGGCGAc -3'
miRNA:   3'- -CGCAGU-GUCGUUUGUacGGCG---------UCGCU- -5'
32013 3' -53.1 NC_006949.1 + 19931 0.7 0.534911
Target:  5'- cGC-UgACAGCAAccgcaaucCAUGCCGCAGCa- -3'
miRNA:   3'- -CGcAgUGUCGUUu-------GUACGGCGUCGcu -5'
32013 3' -53.1 NC_006949.1 + 14238 0.71 0.470519
Target:  5'- -aGUCAgCAGCAGAgAUGCagGCGGCGc -3'
miRNA:   3'- cgCAGU-GUCGUUUgUACGg-CGUCGCu -5'
32013 3' -53.1 NC_006949.1 + 17299 0.72 0.420011
Target:  5'- cGCGgCGuCAGCgGAGCGUGCCGUAGUa- -3'
miRNA:   3'- -CGCaGU-GUCG-UUUGUACGGCGUCGcu -5'
32013 3' -53.1 NC_006949.1 + 42366 0.74 0.321343
Target:  5'- uGCGuUCAUcaaaucggAGCuGAgGUGCCGCAGCGGu -3'
miRNA:   3'- -CGC-AGUG--------UCGuUUgUACGGCGUCGCU- -5'
32013 3' -53.1 NC_006949.1 + 8379 1.11 0.000848
Target:  5'- gGCGUCACAGCAAACAUGCCGCAGCGAg -3'
miRNA:   3'- -CGCAGUGUCGUUUGUACGGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.