miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32015 3' -48.1 NC_006949.1 + 43237 0.66 0.964426
Target:  5'- gAAGCUGUUGCGcg-AGGGaUGUCGUu -3'
miRNA:   3'- gUUCGGCAACGUuuaUUUCgACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 14989 0.66 0.960448
Target:  5'- --cGCCGggaUGUGGAgGAGGCggguguUGCCGCu -3'
miRNA:   3'- guuCGGCa--ACGUUUaUUUCG------ACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 15275 0.66 0.956172
Target:  5'- -uGGCCuugGCucGUGaaaGAGCUGCUGCc -3'
miRNA:   3'- guUCGGcaaCGuuUAU---UUCGACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 18847 0.66 0.951592
Target:  5'- --cGCCGUaGC------GGCUGCCGUu -3'
miRNA:   3'- guuCGGCAaCGuuuauuUCGACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 39393 0.67 0.941498
Target:  5'- gCAAGCCGacUUGguGAgcaucGCUGUCGUc -3'
miRNA:   3'- -GUUCGGC--AACguUUauuu-CGACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 13399 0.67 0.941498
Target:  5'- uCAA-CCGc-GCAGAUAAGGCUGCuucauCGCu -3'
miRNA:   3'- -GUUcGGCaaCGUUUAUUUCGACG-----GCG- -5'
32015 3' -48.1 NC_006949.1 + 37630 0.67 0.935976
Target:  5'- aCAAGUCGcucUGCGAAcgcccuguUAuuuGCUGCUGCu -3'
miRNA:   3'- -GUUCGGCa--ACGUUU--------AUuu-CGACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 18779 0.68 0.903545
Target:  5'- aCGGGCCGccagUUGCAGAUGAGcGCgauaauccaaCCGCa -3'
miRNA:   3'- -GUUCGGC----AACGUUUAUUU-CGac--------GGCG- -5'
32015 3' -48.1 NC_006949.1 + 46525 0.68 0.899117
Target:  5'- aGAGCCGUUGUGAAaguggcucucgaagcUAuuuuuguagcuuAGGCUGCCa- -3'
miRNA:   3'- gUUCGGCAACGUUU---------------AU------------UUCGACGGcg -5'
32015 3' -48.1 NC_006949.1 + 10214 0.69 0.845181
Target:  5'- --cGCCGgcGCGAAUGAcAGCcugGCCGa -3'
miRNA:   3'- guuCGGCaaCGUUUAUU-UCGa--CGGCg -5'
32015 3' -48.1 NC_006949.1 + 34926 0.69 0.844248
Target:  5'- --uGCCGUgaccaguUGCcAGUGuuGGUUGCCGCu -3'
miRNA:   3'- guuCGGCA-------ACGuUUAUu-UCGACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 45778 0.7 0.835726
Target:  5'- gCGAGCCaGUUGUAAGcacUGAAGUuauUGCgGCu -3'
miRNA:   3'- -GUUCGG-CAACGUUU---AUUUCG---ACGgCG- -5'
32015 3' -48.1 NC_006949.1 + 20656 0.7 0.816079
Target:  5'- uCAAGCCGUUu--GAUAuucGAGUUcGCCGCa -3'
miRNA:   3'- -GUUCGGCAAcguUUAU---UUCGA-CGGCG- -5'
32015 3' -48.1 NC_006949.1 + 15566 0.73 0.647657
Target:  5'- -cAGCCaaUGCAcuUAAAGCgcagGCCGCu -3'
miRNA:   3'- guUCGGcaACGUuuAUUUCGa---CGGCG- -5'
32015 3' -48.1 NC_006949.1 + 7217 0.75 0.541617
Target:  5'- -uGGCUGUUgGCGucGUGccGCUGCCGCg -3'
miRNA:   3'- guUCGGCAA-CGUu-UAUuuCGACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 21898 0.78 0.381563
Target:  5'- aCAGGCCaUUGUuGAUGAAGgUGCCGUg -3'
miRNA:   3'- -GUUCGGcAACGuUUAUUUCgACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 13685 0.87 0.106281
Target:  5'- gAAGCUGUUGCGucc-AGGCUGCCGCg -3'
miRNA:   3'- gUUCGGCAACGUuuauUUCGACGGCG- -5'
32015 3' -48.1 NC_006949.1 + 14263 1.12 0.002484
Target:  5'- gCAAGCCGUUGCAAAUAAAGCUGCCGCc -3'
miRNA:   3'- -GUUCGGCAACGUUUAUUUCGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.