Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32015 | 3' | -48.1 | NC_006949.1 | + | 14263 | 1.12 | 0.002484 |
Target: 5'- gCAAGCCGUUGCAAAUAAAGCUGCCGCc -3' miRNA: 3'- -GUUCGGCAACGUUUAUUUCGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 14989 | 0.66 | 0.960448 |
Target: 5'- --cGCCGggaUGUGGAgGAGGCggguguUGCCGCu -3' miRNA: 3'- guuCGGCa--ACGUUUaUUUCG------ACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 15275 | 0.66 | 0.956172 |
Target: 5'- -uGGCCuugGCucGUGaaaGAGCUGCUGCc -3' miRNA: 3'- guUCGGcaaCGuuUAU---UUCGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 18847 | 0.66 | 0.951592 |
Target: 5'- --cGCCGUaGC------GGCUGCCGUu -3' miRNA: 3'- guuCGGCAaCGuuuauuUCGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 39393 | 0.67 | 0.941498 |
Target: 5'- gCAAGCCGacUUGguGAgcaucGCUGUCGUc -3' miRNA: 3'- -GUUCGGC--AACguUUauuu-CGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 13399 | 0.67 | 0.941498 |
Target: 5'- uCAA-CCGc-GCAGAUAAGGCUGCuucauCGCu -3' miRNA: 3'- -GUUcGGCaaCGUUUAUUUCGACG-----GCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 18779 | 0.68 | 0.903545 |
Target: 5'- aCGGGCCGccagUUGCAGAUGAGcGCgauaauccaaCCGCa -3' miRNA: 3'- -GUUCGGC----AACGUUUAUUU-CGac--------GGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 34926 | 0.69 | 0.844248 |
Target: 5'- --uGCCGUgaccaguUGCcAGUGuuGGUUGCCGCu -3' miRNA: 3'- guuCGGCA-------ACGuUUAUu-UCGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 21898 | 0.78 | 0.381563 |
Target: 5'- aCAGGCCaUUGUuGAUGAAGgUGCCGUg -3' miRNA: 3'- -GUUCGGcAACGuUUAUUUCgACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 7217 | 0.75 | 0.541617 |
Target: 5'- -uGGCUGUUgGCGucGUGccGCUGCCGCg -3' miRNA: 3'- guUCGGCAA-CGUu-UAUuuCGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 15566 | 0.73 | 0.647657 |
Target: 5'- -cAGCCaaUGCAcuUAAAGCgcagGCCGCu -3' miRNA: 3'- guUCGGcaACGUuuAUUUCGa---CGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 20656 | 0.7 | 0.816079 |
Target: 5'- uCAAGCCGUUu--GAUAuucGAGUUcGCCGCa -3' miRNA: 3'- -GUUCGGCAAcguUUAU---UUCGA-CGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 45778 | 0.7 | 0.835726 |
Target: 5'- gCGAGCCaGUUGUAAGcacUGAAGUuauUGCgGCu -3' miRNA: 3'- -GUUCGG-CAACGUUU---AUUUCG---ACGgCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 13685 | 0.87 | 0.106281 |
Target: 5'- gAAGCUGUUGCGucc-AGGCUGCCGCg -3' miRNA: 3'- gUUCGGCAACGUuuauUUCGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 10214 | 0.69 | 0.845181 |
Target: 5'- --cGCCGgcGCGAAUGAcAGCcugGCCGa -3' miRNA: 3'- guuCGGCaaCGUUUAUU-UCGa--CGGCg -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 46525 | 0.68 | 0.899117 |
Target: 5'- aGAGCCGUUGUGAAaguggcucucgaagcUAuuuuuguagcuuAGGCUGCCa- -3' miRNA: 3'- gUUCGGCAACGUUU---------------AU------------UUCGACGGcg -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 37630 | 0.67 | 0.935976 |
Target: 5'- aCAAGUCGcucUGCGAAcgcccuguUAuuuGCUGCUGCu -3' miRNA: 3'- -GUUCGGCa--ACGUUU--------AUuu-CGACGGCG- -5' |
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32015 | 3' | -48.1 | NC_006949.1 | + | 43237 | 0.66 | 0.964426 |
Target: 5'- gAAGCUGUUGCGcg-AGGGaUGUCGUu -3' miRNA: 3'- gUUCGGCAACGUuuaUUUCgACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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