Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32015 | 5' | -53.9 | NC_006949.1 | + | 4634 | 0.66 | 0.78859 |
Target: 5'- aCGCuGCCGgcgaaCGUCGUAAu-GAAUGGc -3' miRNA: 3'- cGCGuCGGCg----GCAGCGUUuuCUUGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 7794 | 0.68 | 0.660622 |
Target: 5'- -aGCAG-CGCCGUUGC----GGGCGGg -3' miRNA: 3'- cgCGUCgGCGGCAGCGuuuuCUUGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 8774 | 0.66 | 0.758058 |
Target: 5'- aUGCAGCCGCgGUuaaUGCugcAAAGGGCa- -3' miRNA: 3'- cGCGUCGGCGgCA---GCGu--UUUCUUGcc -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 10351 | 0.68 | 0.671708 |
Target: 5'- aGCGUAGuCCGCCaUUGCucGGAGggUGa -3' miRNA: 3'- -CGCGUC-GGCGGcAGCGu-UUUCuuGCc -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 14297 | 1.14 | 0.000576 |
Target: 5'- cGCGCAGCCGCCGUCGCAAAAGAACGGg -3' miRNA: 3'- -CGCGUCGGCGGCAGCGUUUUCUUGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 14360 | 0.68 | 0.638379 |
Target: 5'- uGCGaCGGCgGCUGcgCGCAGAucGGCGGc -3' miRNA: 3'- -CGC-GUCGgCGGCa-GCGUUUucUUGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 14417 | 0.67 | 0.704693 |
Target: 5'- cGCGUAGCCGCCGcuggCGCuguuGAu--- -3' miRNA: 3'- -CGCGUCGGCGGCa---GCGuuuuCUugcc -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 16272 | 0.69 | 0.576226 |
Target: 5'- aGCGCAGCUGCUGUuggucagacugcuuaUGCAGAGucuAUGGu -3' miRNA: 3'- -CGCGUCGGCGGCA---------------GCGUUUUcu-UGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 18767 | 0.7 | 0.539106 |
Target: 5'- gGUGUggauaugacgGGCCGCCaGUUGCAGAuGAGCGc -3' miRNA: 3'- -CGCG----------UCGGCGG-CAGCGUUUuCUUGCc -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 18853 | 0.66 | 0.78859 |
Target: 5'- -aGCGGCUGCCGUuuccguuaucCGCGAccGGAACc- -3' miRNA: 3'- cgCGUCGGCGGCA----------GCGUUu-UCUUGcc -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 19724 | 0.68 | 0.660622 |
Target: 5'- gGCGCAGCCccugaGCCGgCGUaucuacguucaGAGGGAuuugGCGGu -3' miRNA: 3'- -CGCGUCGG-----CGGCaGCG-----------UUUUCU----UGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 19837 | 0.66 | 0.78859 |
Target: 5'- gGCGCuaucacuGCCGCUGcUGCGGcauGGAuuGCGGu -3' miRNA: 3'- -CGCGu------CGGCGGCaGCGUUu--UCU--UGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 30584 | 0.67 | 0.726339 |
Target: 5'- aGCGCGGaCCGCUcaCGguGAAauGCGGa -3' miRNA: 3'- -CGCGUC-GGCGGcaGCguUUUcuUGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 33651 | 0.66 | 0.778564 |
Target: 5'- aGCGC-GCUGCCGUU-CAGugGGGAAuCGGu -3' miRNA: 3'- -CGCGuCGGCGGCAGcGUU--UUCUU-GCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 33704 | 0.68 | 0.649509 |
Target: 5'- cCGCAuucaacGCCGCCGUUGUu-GGGAauaucGCGGu -3' miRNA: 3'- cGCGU------CGGCGGCAGCGuuUUCU-----UGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 39128 | 0.68 | 0.660622 |
Target: 5'- uGCaGCAGCuCGCCaUCGCGuuuGuACGGa -3' miRNA: 3'- -CG-CGUCG-GCGGcAGCGUuuuCuUGCC- -5' |
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32015 | 5' | -53.9 | NC_006949.1 | + | 43522 | 0.66 | 0.764269 |
Target: 5'- cGgGCAGCCGUaccucucagagCGCAAGGaGACGGu -3' miRNA: 3'- -CgCGUCGGCGgca--------GCGUUUUcUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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