Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32017 | 3' | -54 | NC_006949.1 | + | 5685 | 0.66 | 0.75652 |
Target: 5'- uCUCGCUUGgCUUUcucuucugCGCGGgUGUUAGCg -3' miRNA: 3'- uGAGUGAGUgGAAA--------GCGCC-GCAGUCG- -5' |
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32017 | 3' | -54 | NC_006949.1 | + | 6310 | 0.66 | 0.745946 |
Target: 5'- -gUUACgCGCCUgcaGCGGCGgCAGUg -3' miRNA: 3'- ugAGUGaGUGGAaagCGCCGCaGUCG- -5' |
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32017 | 3' | -54 | NC_006949.1 | + | 35789 | 0.66 | 0.735252 |
Target: 5'- uGCUaaaACUCGCCgucaugaGCGGCG-CAGa -3' miRNA: 3'- -UGAg--UGAGUGGaaag---CGCCGCaGUCg -5' |
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32017 | 3' | -54 | NC_006949.1 | + | 29314 | 0.66 | 0.713553 |
Target: 5'- uCUCACUCcCCcUUCacgccaaugccaGCGGCGUCccauGCu -3' miRNA: 3'- uGAGUGAGuGGaAAG------------CGCCGCAGu---CG- -5' |
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32017 | 3' | -54 | NC_006949.1 | + | 12025 | 0.67 | 0.658047 |
Target: 5'- uCUCGCUCAUCU--UGCaGCuUCAGCu -3' miRNA: 3'- uGAGUGAGUGGAaaGCGcCGcAGUCG- -5' |
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32017 | 3' | -54 | NC_006949.1 | + | 18886 | 0.68 | 0.62435 |
Target: 5'- --aCACUUAUCUUUCGCcGgGUCuGCg -3' miRNA: 3'- ugaGUGAGUGGAAAGCGcCgCAGuCG- -5' |
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32017 | 3' | -54 | NC_006949.1 | + | 17284 | 1.12 | 0.00066 |
Target: 5'- uACUCACUCACCUUUCGCGGCGUCAGCg -3' miRNA: 3'- -UGAGUGAGUGGAAAGCGCCGCAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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