Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32021 | 5' | -42.5 | NC_006949.1 | + | 42373 | 0.67 | 0.999647 |
Target: 5'- uGGAUAuuGCGUUCaUCAAAUcggagcUGAGGu -3' miRNA: 3'- cCCUAUuuUGUAGGgAGUUUA------ACUCC- -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 23300 | 0.67 | 0.999628 |
Target: 5'- uGGGAUGAcaauGGCGUCCCUaauaacuaUGGGa -3' miRNA: 3'- -CCCUAUU----UUGUAGGGAguuua---ACUCc -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 38019 | 0.69 | 0.998533 |
Target: 5'- nGGAgu--GCuAUCCCUCAAAacagGGGGa -3' miRNA: 3'- cCCUauuuUG-UAGGGAGUUUaa--CUCC- -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 10764 | 0.69 | 0.997776 |
Target: 5'- uGGGccgcacUAAAugGcCCgCUCAGGUUGAGGu -3' miRNA: 3'- -CCCu-----AUUUugUaGG-GAGUUUAACUCC- -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 27774 | 0.7 | 0.995275 |
Target: 5'- cGGAUAAAAgaaAUCCCcgCGAGUgcGAGGa -3' miRNA: 3'- cCCUAUUUUg--UAGGGa-GUUUAa-CUCC- -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 38629 | 0.72 | 0.985776 |
Target: 5'- -cGGUGucAUAauUCCCUCAGAUUGAGa -3' miRNA: 3'- ccCUAUuuUGU--AGGGAGUUUAACUCc -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 37953 | 0.73 | 0.969517 |
Target: 5'- --aAUGGcgUAUCCCUCAAAaUGAGGg -3' miRNA: 3'- cccUAUUuuGUAGGGAGUUUaACUCC- -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 38032 | 0.78 | 0.815834 |
Target: 5'- gGGGAUuu----UCCCUCAuuUUGAGGg -3' miRNA: 3'- -CCCUAuuuuguAGGGAGUuuAACUCC- -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 38079 | 0.89 | 0.310766 |
Target: 5'- aGGGAUAGcAC-UCCCUCAAuUUGAGGg -3' miRNA: 3'- -CCCUAUUuUGuAGGGAGUUuAACUCC- -5' |
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32021 | 5' | -42.5 | NC_006949.1 | + | 37994 | 1.18 | 0.006686 |
Target: 5'- aGGGAUAAAACAUCCCUCAAAUUGAGGg -3' miRNA: 3'- -CCCUAUUUUGUAGGGAGUUUAACUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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