miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32021 5' -42.5 NC_006949.1 + 42373 0.67 0.999647
Target:  5'- uGGAUAuuGCGUUCaUCAAAUcggagcUGAGGu -3'
miRNA:   3'- cCCUAUuuUGUAGGgAGUUUA------ACUCC- -5'
32021 5' -42.5 NC_006949.1 + 23300 0.67 0.999628
Target:  5'- uGGGAUGAcaauGGCGUCCCUaauaacuaUGGGa -3'
miRNA:   3'- -CCCUAUU----UUGUAGGGAguuua---ACUCc -5'
32021 5' -42.5 NC_006949.1 + 38019 0.69 0.998533
Target:  5'- nGGAgu--GCuAUCCCUCAAAacagGGGGa -3'
miRNA:   3'- cCCUauuuUG-UAGGGAGUUUaa--CUCC- -5'
32021 5' -42.5 NC_006949.1 + 10764 0.69 0.997776
Target:  5'- uGGGccgcacUAAAugGcCCgCUCAGGUUGAGGu -3'
miRNA:   3'- -CCCu-----AUUUugUaGG-GAGUUUAACUCC- -5'
32021 5' -42.5 NC_006949.1 + 27774 0.7 0.995275
Target:  5'- cGGAUAAAAgaaAUCCCcgCGAGUgcGAGGa -3'
miRNA:   3'- cCCUAUUUUg--UAGGGa-GUUUAa-CUCC- -5'
32021 5' -42.5 NC_006949.1 + 38629 0.72 0.985776
Target:  5'- -cGGUGucAUAauUCCCUCAGAUUGAGa -3'
miRNA:   3'- ccCUAUuuUGU--AGGGAGUUUAACUCc -5'
32021 5' -42.5 NC_006949.1 + 37953 0.73 0.969517
Target:  5'- --aAUGGcgUAUCCCUCAAAaUGAGGg -3'
miRNA:   3'- cccUAUUuuGUAGGGAGUUUaACUCC- -5'
32021 5' -42.5 NC_006949.1 + 38032 0.78 0.815834
Target:  5'- gGGGAUuu----UCCCUCAuuUUGAGGg -3'
miRNA:   3'- -CCCUAuuuuguAGGGAGUuuAACUCC- -5'
32021 5' -42.5 NC_006949.1 + 38079 0.89 0.310766
Target:  5'- aGGGAUAGcAC-UCCCUCAAuUUGAGGg -3'
miRNA:   3'- -CCCUAUUuUGuAGGGAGUUuAACUCC- -5'
32021 5' -42.5 NC_006949.1 + 37994 1.18 0.006686
Target:  5'- aGGGAUAAAACAUCCCUCAAAUUGAGGg -3'
miRNA:   3'- -CCCUAUUUUGUAGGGAGUUUAACUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.