miRNA: 3'- gUUGUCUUuuUUCGacaGACGUaCCG- -5'
miRNA: 3'- -GUUGUCUuUUUUCGa--------CAGA---CGUACCG- -5'
miRNA: 3'- -GUUGUCUUUUUUCGACAGACGUACCG- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 32031 | 3' | -45.2 | NC_006951.1 | + | 7192 | 0.69 | 0.511368 |
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Target: 5'- aAGCGGAAu-GAGCg--CUGCA-GGCg -3' miRNA: 3'- gUUGUCUUuuUUCGacaGACGUaCCG- -5' |
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| 32031 | 3' | -45.2 | NC_006951.1 | + | 3376 | 0.72 | 0.322787 |
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Target: 5'- cUAGCAGAcAAAAGCguuggccugGUCUcggGCGUGGUg -3' miRNA: 3'- -GUUGUCUuUUUUCGa--------CAGA---CGUACCG- -5' |
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| 32031 | 3' | -45.2 | NC_006951.1 | + | 15 | 1.13 | 0.000331 |
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Target: 5'- uCAACAGAAAAAAGCUGUCUGCAUGGCu -3' miRNA: 3'- -GUUGUCUUUUUUCGACAGACGUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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