miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32039 3' -48.1 NC_006953.1 + 1424 0.66 0.927071
Target:  5'- cCAGcCGAugucUAGCUcuuGUAUCAUGGCAu- -3'
miRNA:   3'- aGUC-GCU----AUCGAu--CAUGGUAUCGUug -5'
32039 3' -48.1 NC_006953.1 + 14154 0.67 0.875051
Target:  5'- cCGGUGggAGCgccGGaACUGUGGCAGCa -3'
miRNA:   3'- aGUCGCuaUCGa--UCaUGGUAUCGUUG- -5'
32039 3' -48.1 NC_006953.1 + 35026 0.68 0.838537
Target:  5'- aCAGgGAUGuaucGCc-GUACCGUGGCGAUg -3'
miRNA:   3'- aGUCgCUAU----CGauCAUGGUAUCGUUG- -5'
32039 3' -48.1 NC_006953.1 + 22079 0.7 0.742385
Target:  5'- uUCAGCGAUAGC-GGUAUUcUGGCu-- -3'
miRNA:   3'- -AGUCGCUAUCGaUCAUGGuAUCGuug -5'
32039 3' -48.1 NC_006953.1 + 34925 0.98 0.0164
Target:  5'- aUCAGC-AUAGCUAGUACCAUAGCAACu -3'
miRNA:   3'- -AGUCGcUAUCGAUCAUGGUAUCGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.