miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32053 3' -40.9 NC_006998.1 + 43252 0.67 1
Target:  5'- cGUcaUUCUAAAaGACGGAGGAUcuccAUCa- -3'
miRNA:   3'- aCA--AAGAUUUcUUGCCUCUUA----UAGau -5'
32053 3' -40.9 NC_006998.1 + 128223 0.67 1
Target:  5'- --aUUCUuugguAGAAUGGGGAAcAUCUAc -3'
miRNA:   3'- acaAAGAuu---UCUUGCCUCUUaUAGAU- -5'
32053 3' -40.9 NC_006998.1 + 114437 0.66 1
Target:  5'- ---aUCgaAAAGAACGGAGAAUuguuGUCg- -3'
miRNA:   3'- acaaAGa-UUUCUUGCCUCUUA----UAGau -5'
32053 3' -40.9 NC_006998.1 + 54240 0.77 0.998119
Target:  5'- aUGUUgUCUGAAGGACGGAuGAAU-UCUAa -3'
miRNA:   3'- -ACAA-AGAUUUCUUGCCU-CUUAuAGAU- -5'
32053 3' -40.9 NC_006998.1 + 53980 1.09 0.10986
Target:  5'- cUGUUUCUAAAGAACGGAGAAUAUCUAu -3'
miRNA:   3'- -ACAAAGAUUUCUUGCCUCUUAUAGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.