miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 3' -57.6 NC_007016.1 + 45161 0.67 0.719498
Target:  5'- gGCCGGgAuauGCAGGCggUAGCA--CGGGCa -3'
miRNA:   3'- -CGGUCgUu--CGUCCG--GUCGUucGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 105462 0.67 0.719498
Target:  5'- uGCUGGCGugugcggguuuGGCGGGCuCGGUGAGCacucgGGGUu -3'
miRNA:   3'- -CGGUCGU-----------UCGUCCG-GUCGUUCG-----UCCG- -5'
32068 3' -57.6 NC_007016.1 + 16111 0.67 0.719498
Target:  5'- cGCCAGCuucuGGUAcaccGCCAGgugGGGCAGGUu -3'
miRNA:   3'- -CGGUCGu---UCGUc---CGGUCg--UUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 73697 0.67 0.709354
Target:  5'- gGCCcGCc-GCcuGGGCgucuGGCGGGCAGGCa -3'
miRNA:   3'- -CGGuCGuuCG--UCCGg---UCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 52806 0.67 0.709354
Target:  5'- uCCucGCAAcGCAGuCCAaacGCGAGCGGGCc -3'
miRNA:   3'- cGGu-CGUU-CGUCcGGU---CGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 63132 0.67 0.699144
Target:  5'- gGCCAGgGAgaaccGguGGCCGcGUGAGC-GGCa -3'
miRNA:   3'- -CGGUCgUU-----CguCCGGU-CGUUCGuCCG- -5'
32068 3' -57.6 NC_007016.1 + 26399 0.67 0.699144
Target:  5'- aGCCGGCGAGCcaccacgccGGCCuugccacGCAGccGguGGCu -3'
miRNA:   3'- -CGGUCGUUCGu--------CCGGu------CGUU--CguCCG- -5'
32068 3' -57.6 NC_007016.1 + 16960 0.67 0.688874
Target:  5'- cGCCGGagacgcGCAGGgguCCGcCGGGCAGGCu -3'
miRNA:   3'- -CGGUCguu---CGUCC---GGUcGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 22412 0.68 0.678556
Target:  5'- cGCguGUuuuGCGGGCCGGgGucGGCAcGGCc -3'
miRNA:   3'- -CGguCGuu-CGUCCGGUCgU--UCGU-CCG- -5'
32068 3' -57.6 NC_007016.1 + 22334 0.68 0.678556
Target:  5'- cGCCGGgucAGCAcGGgCAGCGAG-GGGCa -3'
miRNA:   3'- -CGGUCgu-UCGU-CCgGUCGUUCgUCCG- -5'
32068 3' -57.6 NC_007016.1 + 55389 0.68 0.667161
Target:  5'- cGCCAGCccGGUgcgguuaacguaaGGGUCAGCGAGCcaaacauGGUg -3'
miRNA:   3'- -CGGUCGu-UCG-------------UCCGGUCGUUCGu------CCG- -5'
32068 3' -57.6 NC_007016.1 + 119916 0.68 0.660929
Target:  5'- cGCUAGguGGCGGGCUAuuuugaucaggccgcGCAcgcauugaccguuAGguGGCg -3'
miRNA:   3'- -CGGUCguUCGUCCGGU---------------CGU-------------UCguCCG- -5'
32068 3' -57.6 NC_007016.1 + 19539 0.68 0.647401
Target:  5'- uCCAGC-GGCAGucgggggaggcGCCAGCGuagGGCuGGCc -3'
miRNA:   3'- cGGUCGuUCGUC-----------CGGUCGU---UCGuCCG- -5'
32068 3' -57.6 NC_007016.1 + 20843 0.68 0.626553
Target:  5'- gGCCgcGGCGAGCAcGGCgAGCugcAGUAccuGGCg -3'
miRNA:   3'- -CGG--UCGUUCGU-CCGgUCGu--UCGU---CCG- -5'
32068 3' -57.6 NC_007016.1 + 129887 0.68 0.626553
Target:  5'- gGCCccCAGGCGcccGGCCGGCG-GCGGcGCg -3'
miRNA:   3'- -CGGucGUUCGU---CCGGUCGUuCGUC-CG- -5'
32068 3' -57.6 NC_007016.1 + 76998 0.69 0.605722
Target:  5'- cGCCAGCGuguuuuuGCGGGUCGcCAaccAGUGGGCc -3'
miRNA:   3'- -CGGUCGUu------CGUCCGGUcGU---UCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 21376 0.69 0.605722
Target:  5'- uGCCAGacucCAGGCCuucgucggaAGCAucgucaAGCAGGCu -3'
miRNA:   3'- -CGGUCguucGUCCGG---------UCGU------UCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 26253 0.69 0.595334
Target:  5'- uCCGcGCGGGCcccgguggAGGCCAGCGugcAGCcGGCc -3'
miRNA:   3'- cGGU-CGUUCG--------UCCGGUCGU---UCGuCCG- -5'
32068 3' -57.6 NC_007016.1 + 17269 0.69 0.595334
Target:  5'- cGCCGGU--GUGGGUgGGCAGGaCGGGUc -3'
miRNA:   3'- -CGGUCGuuCGUCCGgUCGUUC-GUCCG- -5'
32068 3' -57.6 NC_007016.1 + 126223 0.69 0.584973
Target:  5'- gGCgCAGUAGGUcuGGGCCAuaGGGUAGGg -3'
miRNA:   3'- -CG-GUCGUUCG--UCCGGUcgUUCGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.