miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 5' -58.8 NC_007016.1 + 73698 0.69 0.494102
Target:  5'- uGGCCcGCcgccuGGGCGucuGGCgGGCAGGCAGa -3'
miRNA:   3'- uCCGGuCG-----UUCGU---CCGgUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 26247 0.69 0.494102
Target:  5'- cGGGCCccGguGG-AGGCCAGCGuGCAGc -3'
miRNA:   3'- -UCCGGu-CguUCgUCCGGUCGUuCGUC- -5'
32068 5' -58.8 NC_007016.1 + 126222 0.69 0.484377
Target:  5'- uGGCgCAGUAGGUcuGGGCCAuaGGGUAGg -3'
miRNA:   3'- uCCG-GUCGUUCG--UCCGGUcgUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 129885 0.7 0.465208
Target:  5'- gGGGCCccCAGGCGcccGGCCGGC-GGCGGc -3'
miRNA:   3'- -UCCGGucGUUCGU---CCGGUCGuUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 96491 0.7 0.428104
Target:  5'- uGGCCGGUgaccAGGCgacGGGCCAGUucgucGGCGGg -3'
miRNA:   3'- uCCGGUCG----UUCG---UCCGGUCGu----UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 26243 0.71 0.410219
Target:  5'- aAGGCCGGCGugguGGCucGCCGGCuguggGGGCGGc -3'
miRNA:   3'- -UCCGGUCGU----UCGucCGGUCG-----UUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 20844 0.73 0.320626
Target:  5'- cGGCCgcGGCGAGCAcGGCgAGCu-GCAGu -3'
miRNA:   3'- uCCGG--UCGUUCGU-CCGgUCGuuCGUC- -5'
32068 5' -58.8 NC_007016.1 + 1714 0.73 0.305998
Target:  5'- uGGCCGuagauguuccGC-GGCAGGUUAGCAAGUAGg -3'
miRNA:   3'- uCCGGU----------CGuUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 76819 0.75 0.217799
Target:  5'- cGGGUcgCAGCGgcGGCGGcGCCGGCAGGCAc -3'
miRNA:   3'- -UCCG--GUCGU--UCGUC-CGGUCGUUCGUc -5'
32068 5' -58.8 NC_007016.1 + 130174 0.77 0.182447
Target:  5'- cGGCC-GCGGGCccGGGCCGGcCGGGCGGa -3'
miRNA:   3'- uCCGGuCGUUCG--UCCGGUC-GUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 317 0.77 0.181052
Target:  5'- nGGCCAGCAAGCAGGCCuacugucccucuaaAGacccucAGCAGc -3'
miRNA:   3'- uCCGGUCGUUCGUCCGG--------------UCgu----UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 22796 0.78 0.156284
Target:  5'- cGGGCCAgagacGCGAGCAccgcgagcGGCCGGCAGGUGGc -3'
miRNA:   3'- -UCCGGU-----CGUUCGU--------CCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 497 0.8 0.107993
Target:  5'- nGGCCAGCAAGCAGGCCA-CAAGn-- -3'
miRNA:   3'- uCCGGUCGUUCGUCCGGUcGUUCguc -5'
32068 5' -58.8 NC_007016.1 + 255 0.81 0.094422
Target:  5'- -aGCaAGCGAGCAGGCCAGCAGGCc- -3'
miRNA:   3'- ucCGgUCGUUCGUCCGGUCGUUCGuc -5'
32068 5' -58.8 NC_007016.1 + 130630 0.81 0.094422
Target:  5'- -aGCaAGCGAGCAGGCCAGCAGGCc- -3'
miRNA:   3'- ucCGgUCGUUCGUCCGGUCGUUCGuc -5'
32068 5' -58.8 NC_007016.1 + 414 1.07 0.001297
Target:  5'- nGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- uCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 130704 1.07 0.001297
Target:  5'- nGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- uCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 342 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 378 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 439 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.