Results 21 - 40 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 13452 | 0.72 | 0.437217 |
Target: 5'- aGCCuGCAgacgucugguGGCGGcugaacggcGCCGGCGggGGCGGGCg -3' miRNA: 3'- -CGGuCGU----------UCGUC---------CGGUCGU--UCGUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 15973 | 0.7 | 0.554132 |
Target: 5'- aGCUGGCGAGCAGGU--GCGAGgagcugcccCAGGUg -3' miRNA: 3'- -CGGUCGUUCGUCCGguCGUUC---------GUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 16111 | 0.67 | 0.719498 |
Target: 5'- cGCCAGCuucuGGUAcaccGCCAGgugGGGCAGGUu -3' miRNA: 3'- -CGGUCGu---UCGUc---CGGUCg--UUCGUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 16960 | 0.67 | 0.688874 |
Target: 5'- cGCCGGagacgcGCAGGgguCCGcCGGGCAGGCu -3' miRNA: 3'- -CGGUCguu---CGUCC---GGUcGUUCGUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 17269 | 0.69 | 0.595334 |
Target: 5'- cGCCGGU--GUGGGUgGGCAGGaCGGGUc -3' miRNA: 3'- -CGGUCGuuCGUCCGgUCGUUC-GUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 19539 | 0.68 | 0.647401 |
Target: 5'- uCCAGC-GGCAGucgggggaggcGCCAGCGuagGGCuGGCc -3' miRNA: 3'- cGGUCGuUCGUC-----------CGGUCGU---UCGuCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 20843 | 0.68 | 0.626553 |
Target: 5'- gGCCgcGGCGAGCAcGGCgAGCugcAGUAccuGGCg -3' miRNA: 3'- -CGG--UCGUUCGU-CCGgUCGu--UCGU---CCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 21376 | 0.69 | 0.605722 |
Target: 5'- uGCCAGacucCAGGCCuucgucggaAGCAucgucaAGCAGGCu -3' miRNA: 3'- -CGGUCguucGUCCGG---------UCGU------UCGUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 22012 | 0.7 | 0.513813 |
Target: 5'- cGCCAGguGGCuGGCCAcGCcuGGUuuccgucgAGGCg -3' miRNA: 3'- -CGGUCguUCGuCCGGU-CGu-UCG--------UCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 22334 | 0.68 | 0.678556 |
Target: 5'- cGCCGGgucAGCAcGGgCAGCGAG-GGGCa -3' miRNA: 3'- -CGGUCgu-UCGU-CCgGUCGUUCgUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 22412 | 0.68 | 0.678556 |
Target: 5'- cGCguGUuuuGCGGGCCGGgGucGGCAcGGCc -3' miRNA: 3'- -CGguCGuu-CGUCCGGUCgU--UCGU-CCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 22798 | 0.76 | 0.252617 |
Target: 5'- gGCCAgagacGCGAGCAccgcgagcGGCCGGCAGGU-GGCg -3' miRNA: 3'- -CGGU-----CGUUCGU--------CCGGUCGUUCGuCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 26229 | 0.75 | 0.271682 |
Target: 5'- aCCGGCugcguGGCAaGGCCGGCGuGguGGCu -3' miRNA: 3'- cGGUCGu----UCGU-CCGGUCGUuCguCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 26253 | 0.69 | 0.595334 |
Target: 5'- uCCGcGCGGGCcccgguggAGGCCAGCGugcAGCcGGCc -3' miRNA: 3'- cGGU-CGUUCG--------UCCGGUCGU---UCGuCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 26399 | 0.67 | 0.699144 |
Target: 5'- aGCCGGCGAGCcaccacgccGGCCuugccacGCAGccGguGGCu -3' miRNA: 3'- -CGGUCGUUCGu--------CCGGu------CGUU--CguCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 28277 | 0.69 | 0.564365 |
Target: 5'- cGCCaAGC-AGUAGcUCAGCGccacuAGCAGGCg -3' miRNA: 3'- -CGG-UCGuUCGUCcGGUCGU-----UCGUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 39982 | 0.66 | 0.749421 |
Target: 5'- gGCCA-CGAGguGGUgGGac-GCAGGCc -3' miRNA: 3'- -CGGUcGUUCguCCGgUCguuCGUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 40953 | 0.66 | 0.768852 |
Target: 5'- aCCGGCAcGCgcuGGGCCGGCA-GCc-GCg -3' miRNA: 3'- cGGUCGUuCG---UCCGGUCGUuCGucCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 45161 | 0.67 | 0.719498 |
Target: 5'- gGCCGGgAuauGCAGGCggUAGCA--CGGGCa -3' miRNA: 3'- -CGGUCgUu--CGUCCG--GUCGUucGUCCG- -5' |
|||||||
32069 | 3' | -57.6 | NC_007016.1 | + | 48701 | 0.67 | 0.729563 |
Target: 5'- uCCGGCAGGCgaaugaGGGCCcacgguuGCgAAGUGGGUa -3' miRNA: 3'- cGGUCGUUCG------UCCGGu------CG-UUCGUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home