miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32070 5' -58.7 NC_007016.1 + 980 1.1 0.001218
Target:  5'- uUGGGGUCUCAAACCACGCCCCGUCCCc -3'
miRNA:   3'- -ACCCCAGAGUUUGGUGCGGGGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 8126 0.73 0.414573
Target:  5'- uUGcGGUC-CAcGCCGCGCCCCGcgaaguaccccagguUCCCg -3'
miRNA:   3'- -ACcCCAGaGUuUGGUGCGGGGC---------------AGGG- -5'
32070 5' -58.7 NC_007016.1 + 13228 0.73 0.394307
Target:  5'- -uGGGUcCUCGagGACCACGCCCC--CCCu -3'
miRNA:   3'- acCCCA-GAGU--UUGGUGCGGGGcaGGG- -5'
32070 5' -58.7 NC_007016.1 + 13615 0.75 0.292192
Target:  5'- gGGGGUC-CGggacgacuggccguuGGCCGCGCgCCGUCCa -3'
miRNA:   3'- aCCCCAGaGU---------------UUGGUGCGgGGCAGGg -5'
32070 5' -58.7 NC_007016.1 + 13956 0.74 0.331561
Target:  5'- gGGuGGUaCUCGugcgccguGCCACGCCCCG-CCUa -3'
miRNA:   3'- aCC-CCA-GAGUu-------UGGUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 14891 0.66 0.757856
Target:  5'- gGGGGUUaUCAGGgCGCGacggugauuaaCCCCaUCCCg -3'
miRNA:   3'- aCCCCAG-AGUUUgGUGC-----------GGGGcAGGG- -5'
32070 5' -58.7 NC_007016.1 + 15055 0.7 0.56969
Target:  5'- aUGGGGUUaaUCAccgUCGCGCCCUgauaaccccccuGUCCCu -3'
miRNA:   3'- -ACCCCAG--AGUuu-GGUGCGGGG------------CAGGG- -5'
32070 5' -58.7 NC_007016.1 + 15919 0.67 0.699855
Target:  5'- cGGcGGUCgcuugCAcaacAGCCGCGCCgCCG-CCUu -3'
miRNA:   3'- aCC-CCAGa----GU----UUGGUGCGG-GGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 16744 0.69 0.59964
Target:  5'- cGGGGgccacgCGcGCCGCGUCCgCGUCgCCg -3'
miRNA:   3'- aCCCCaga---GUuUGGUGCGGG-GCAG-GG- -5'
32070 5' -58.7 NC_007016.1 + 16831 0.67 0.699855
Target:  5'- aGGcGUCUCAGACguCGCCCCacucuuucGUCgCg -3'
miRNA:   3'- aCCcCAGAGUUUGguGCGGGG--------CAGgG- -5'
32070 5' -58.7 NC_007016.1 + 16906 0.69 0.609679
Target:  5'- uUGGGGcgccuUC-CGAGCgCGCGCCgCCGUUCUc -3'
miRNA:   3'- -ACCCC-----AGaGUUUG-GUGCGG-GGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 17099 0.66 0.785523
Target:  5'- cUGGGccaGUC-CGGACC-CGUCCUG-CCCa -3'
miRNA:   3'- -ACCC---CAGaGUUUGGuGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 17384 0.69 0.59964
Target:  5'- cUGGuGGcCgcc-GCCGCGCCCUGcCCCg -3'
miRNA:   3'- -ACC-CCaGaguuUGGUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 18880 0.67 0.696888
Target:  5'- cGGGGUCgcgcguuucgCAAACaCACGagguuucccagacaCCCCcUCCCg -3'
miRNA:   3'- aCCCCAGa---------GUUUG-GUGC--------------GGGGcAGGG- -5'
32070 5' -58.7 NC_007016.1 + 20251 0.66 0.79449
Target:  5'- cGGGGUCcCGuuuaacauugccAGCUACGCCC--UCCUg -3'
miRNA:   3'- aCCCCAGaGU------------UUGGUGCGGGgcAGGG- -5'
32070 5' -58.7 NC_007016.1 + 22191 0.69 0.59964
Target:  5'- cUGGGGgcgcguugUCUCGucguggcucgcAAUCAcCGCCCCGUCUg -3'
miRNA:   3'- -ACCCC--------AGAGU-----------UUGGU-GCGGGGCAGGg -5'
32070 5' -58.7 NC_007016.1 + 37712 0.73 0.394307
Target:  5'- aGGuGGUCUCuguuuCCAUaGCCCUGUCCa -3'
miRNA:   3'- aCC-CCAGAGuuu--GGUG-CGGGGCAGGg -5'
32070 5' -58.7 NC_007016.1 + 40174 0.7 0.566714
Target:  5'- uUGGGGUCcugaagacaguuaaUCAgcucgGACgCugGCCUgCGUCCCa -3'
miRNA:   3'- -ACCCCAG--------------AGU-----UUG-GugCGGG-GCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 40641 0.69 0.608674
Target:  5'- gUGGGGUguauauccgaggcCUCGAGCaucucgcggaGCGUCCCGUUCUc -3'
miRNA:   3'- -ACCCCA-------------GAGUUUGg---------UGCGGGGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 42613 0.67 0.709711
Target:  5'- -uGGGUCgu-AACUACGCCCUGgacauggacCCCg -3'
miRNA:   3'- acCCCAGaguUUGGUGCGGGGCa--------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.