miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32070 5' -58.7 NC_007016.1 + 130134 0.68 0.689945
Target:  5'- cGGGGgaggCcGGCgGCGCCCCG-CUCg -3'
miRNA:   3'- aCCCCaga-GuUUGgUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 70904 0.68 0.669994
Target:  5'- cGcGGGUCUgAcACgUACGCCCgagGUCCCg -3'
miRNA:   3'- aC-CCCAGAgUuUG-GUGCGGGg--CAGGG- -5'
32070 5' -58.7 NC_007016.1 + 16906 0.69 0.609679
Target:  5'- uUGGGGcgccuUC-CGAGCgCGCGCCgCCGUUCUc -3'
miRNA:   3'- -ACCCC-----AGaGUUUG-GUGCGG-GGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 40641 0.69 0.608674
Target:  5'- gUGGGGUguauauccgaggcCUCGAGCaucucgcggaGCGUCCCGUUCUc -3'
miRNA:   3'- -ACCCCA-------------GAGUUUGg---------UGCGGGGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 130530 0.69 0.59964
Target:  5'- cGGGGccCUCgg-UCGCGCCCCGgggccggCCCc -3'
miRNA:   3'- aCCCCa-GAGuuuGGUGCGGGGCa------GGG- -5'
32070 5' -58.7 NC_007016.1 + 16744 0.69 0.59964
Target:  5'- cGGGGgccacgCGcGCCGCGUCCgCGUCgCCg -3'
miRNA:   3'- aCCCCaga---GUuUGGUGCGGG-GCAG-GG- -5'
32070 5' -58.7 NC_007016.1 + 22191 0.69 0.59964
Target:  5'- cUGGGGgcgcguugUCUCGucguggcucgcAAUCAcCGCCCCGUCUg -3'
miRNA:   3'- -ACCCC--------AGAGU-----------UUGGU-GCGGGGCAGGg -5'
32070 5' -58.7 NC_007016.1 + 17384 0.69 0.59964
Target:  5'- cUGGuGGcCgcc-GCCGCGCCCUGcCCCg -3'
miRNA:   3'- -ACC-CCaGaguuUGGUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 15055 0.7 0.56969
Target:  5'- aUGGGGUUaaUCAccgUCGCGCCCUgauaaccccccuGUCCCu -3'
miRNA:   3'- -ACCCCAG--AGUuu-GGUGCGGGG------------CAGGG- -5'
32070 5' -58.7 NC_007016.1 + 40174 0.7 0.566714
Target:  5'- uUGGGGUCcugaagacaguuaaUCAgcucgGACgCugGCCUgCGUCCCa -3'
miRNA:   3'- -ACCCCAG--------------AGU-----UUG-GugCGGG-GCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 89967 0.7 0.559784
Target:  5'- aGGGGg---AAGCCGCGa-CCGUCCCg -3'
miRNA:   3'- aCCCCagagUUUGGUGCggGGCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 71118 0.7 0.549926
Target:  5'- cGGGGcgCUCAGgagGCgGCGCgCCCaGUCCa -3'
miRNA:   3'- aCCCCa-GAGUU---UGgUGCG-GGG-CAGGg -5'
32070 5' -58.7 NC_007016.1 + 68457 0.71 0.520698
Target:  5'- gGGGGUUUacuguuGCgGCGCCCCGaccgucgCCCu -3'
miRNA:   3'- aCCCCAGAguu---UGgUGCGGGGCa------GGG- -5'
32070 5' -58.7 NC_007016.1 + 59353 0.71 0.511089
Target:  5'- gGGuGGUCUCGAAgUugGUCCaGUCCUu -3'
miRNA:   3'- aCC-CCAGAGUUUgGugCGGGgCAGGG- -5'
32070 5' -58.7 NC_007016.1 + 130097 0.72 0.428434
Target:  5'- gGGGGUCccgCGgggGGCCGgggcCGCCCCcggGUCCCg -3'
miRNA:   3'- aCCCCAGa--GU---UUGGU----GCGGGG---CAGGG- -5'
32070 5' -58.7 NC_007016.1 + 8126 0.73 0.414573
Target:  5'- uUGcGGUC-CAcGCCGCGCCCCGcgaaguaccccagguUCCCg -3'
miRNA:   3'- -ACcCCAGaGUuUGGUGCGGGGC---------------AGGG- -5'
32070 5' -58.7 NC_007016.1 + 37712 0.73 0.394307
Target:  5'- aGGuGGUCUCuguuuCCAUaGCCCUGUCCa -3'
miRNA:   3'- aCC-CCAGAGuuu--GGUG-CGGGGCAGGg -5'
32070 5' -58.7 NC_007016.1 + 13228 0.73 0.394307
Target:  5'- -uGGGUcCUCGagGACCACGCCCC--CCCu -3'
miRNA:   3'- acCCCA-GAGU--UUGGUGCGGGGcaGGG- -5'
32070 5' -58.7 NC_007016.1 + 13956 0.74 0.331561
Target:  5'- gGGuGGUaCUCGugcgccguGCCACGCCCCG-CCUa -3'
miRNA:   3'- aCC-CCA-GAGUu-------UGGUGCGGGGCaGGG- -5'
32070 5' -58.7 NC_007016.1 + 13615 0.75 0.292192
Target:  5'- gGGGGUC-CGggacgacuggccguuGGCCGCGCgCCGUCCa -3'
miRNA:   3'- aCCCCAGaGU---------------UUGGUGCGgGGCAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.