miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32071 3' -53.9 NC_007016.1 + 1058 0.67 0.90276
Target:  5'- uGGgGGAGCGuuGCUUGggauagggccGGGGGAAAAa -3'
miRNA:   3'- -CUgCUUCGCggCGGAC----------UCCUCUUUUa -5'
32071 3' -53.9 NC_007016.1 + 25368 0.67 0.90276
Target:  5'- uGGCGGcuauucagGGCccuccGCCGCuccCUGAGGAGGAAAa -3'
miRNA:   3'- -CUGCU--------UCG-----CGGCG---GACUCCUCUUUUa -5'
32071 3' -53.9 NC_007016.1 + 102011 0.67 0.89608
Target:  5'- -cCGAGGCGUCGa-UGAGGuGAAAGUu -3'
miRNA:   3'- cuGCUUCGCGGCggACUCCuCUUUUA- -5'
32071 3' -53.9 NC_007016.1 + 21188 0.67 0.89608
Target:  5'- cGugGAAGCGCC-CCcGuGGAGGc--- -3'
miRNA:   3'- -CugCUUCGCGGcGGaCuCCUCUuuua -5'
32071 3' -53.9 NC_007016.1 + 85852 0.67 0.881978
Target:  5'- --gGggGCGUC-UCUGGGGAGAGAu- -3'
miRNA:   3'- cugCuuCGCGGcGGACUCCUCUUUua -5'
32071 3' -53.9 NC_007016.1 + 14008 0.68 0.859043
Target:  5'- cGACGAGGCgGUCG-CUGAGGGucGAGAGc -3'
miRNA:   3'- -CUGCUUCG-CGGCgGACUCCU--CUUUUa -5'
32071 3' -53.9 NC_007016.1 + 130152 0.68 0.850946
Target:  5'- gGGCGGAGgGCCgggaGCCgGGGGAGGc--- -3'
miRNA:   3'- -CUGCUUCgCGG----CGGaCUCCUCUuuua -5'
32071 3' -53.9 NC_007016.1 + 123519 0.69 0.828911
Target:  5'- cGACGucGCgGCCGUCUccaccaacgaccuuaGAGGAGGGAAc -3'
miRNA:   3'- -CUGCuuCG-CGGCGGA---------------CUCCUCUUUUa -5'
32071 3' -53.9 NC_007016.1 + 130318 0.7 0.769438
Target:  5'- gGugGucuccGCGCCGCCggGAGGGGGGc-- -3'
miRNA:   3'- -CugCuu---CGCGGCGGa-CUCCUCUUuua -5'
32071 3' -53.9 NC_007016.1 + 99530 0.75 0.479441
Target:  5'- cGACGAAGCGUCGUCUGAcGAcGAAGGg -3'
miRNA:   3'- -CUGCUUCGCGGCGGACUcCU-CUUUUa -5'
32071 3' -53.9 NC_007016.1 + 10133 1.07 0.004635
Target:  5'- cGACGAAGCGCCGCCUGAGGAGAAAAUg -3'
miRNA:   3'- -CUGCUUCGCGGCGGACUCCUCUUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.