miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32071 5' -59.2 NC_007016.1 + 22194 0.68 0.659438
Target:  5'- gGGGCGCguuguCUCGUCGUGgcucGCaaucacCGCCCCg -3'
miRNA:   3'- -CCUGCG-----GAGCGGCAUa---CGcu----GCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 7846 0.68 0.656459
Target:  5'- cGGCGCgUCaGCCGgucgccgccacgggGCGucuGCGCCCCg -3'
miRNA:   3'- cCUGCGgAG-CGGCaua-----------CGC---UGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 17385 0.68 0.653478
Target:  5'- uGGugGCCgcCGCCGcgcccugccccgugGUGCGAguaaGCUCCg -3'
miRNA:   3'- -CCugCGGa-GCGGCa-------------UACGCUg---CGGGG- -5'
32071 5' -59.2 NC_007016.1 + 30881 0.69 0.629595
Target:  5'- aGGGCgGCCgUGCCGggcggugGUGCG-CGgCCCa -3'
miRNA:   3'- -CCUG-CGGaGCGGCa------UACGCuGCgGGG- -5'
32071 5' -59.2 NC_007016.1 + 119822 0.69 0.629595
Target:  5'- gGGGCGCagUCGCgGUAggggGCGugGCgCg -3'
miRNA:   3'- -CCUGCGg-AGCGgCAUa---CGCugCGgGg -5'
32071 5' -59.2 NC_007016.1 + 123589 0.69 0.619641
Target:  5'- uGGcCGCCcugaUCGCCcc---CGGCGCCCCg -3'
miRNA:   3'- -CCuGCGG----AGCGGcauacGCUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 13956 0.69 0.609696
Target:  5'- gGGugGUacucgugCGCCGU--GCcACGCCCCg -3'
miRNA:   3'- -CCugCGga-----GCGGCAuaCGcUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 53542 0.69 0.589861
Target:  5'- gGGAUuuauCCUCuCUGUGUGCcaACGCCCCa -3'
miRNA:   3'- -CCUGc---GGAGcGGCAUACGc-UGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 9430 0.7 0.570141
Target:  5'- cGGACGCCgUGCUGc--GUGGCGUCCg -3'
miRNA:   3'- -CCUGCGGaGCGGCauaCGCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 130509 0.7 0.560341
Target:  5'- gGGGCcgGCCcCGCCGa----GGCGCCCCg -3'
miRNA:   3'- -CCUG--CGGaGCGGCauacgCUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 121434 0.7 0.540887
Target:  5'- cGGGCGaUgUUGCCGUG-GCGGCGUCUg -3'
miRNA:   3'- -CCUGC-GgAGCGGCAUaCGCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 76649 0.71 0.493349
Target:  5'- cGAUGCUcgUUGCCGUAUGUG-CGCCguCCg -3'
miRNA:   3'- cCUGCGG--AGCGGCAUACGCuGCGG--GG- -5'
32071 5' -59.2 NC_007016.1 + 130378 0.71 0.47487
Target:  5'- gGGA-GCCgcgCGCCGcggcuUGUGGgGCCCCg -3'
miRNA:   3'- -CCUgCGGa--GCGGCau---ACGCUgCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 22646 0.71 0.46576
Target:  5'- cGGCGCC--GCCGc--GUGGCGCCCCc -3'
miRNA:   3'- cCUGCGGagCGGCauaCGCUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 130413 0.71 0.46576
Target:  5'- aGGAcCGCCaUGCCGggcgGCGGcCGCCCg -3'
miRNA:   3'- -CCU-GCGGaGCGGCaua-CGCU-GCGGGg -5'
32071 5' -59.2 NC_007016.1 + 130033 0.72 0.438993
Target:  5'- cGGGCGCCUgggggccccCGCCGg--GCGcCGCCgCu -3'
miRNA:   3'- -CCUGCGGA---------GCGGCauaCGCuGCGGgG- -5'
32071 5' -59.2 NC_007016.1 + 52854 0.72 0.430268
Target:  5'- -uGCGCCUCGCCGggAUGCagcaACGUCgCCa -3'
miRNA:   3'- ccUGCGGAGCGGCa-UACGc---UGCGG-GG- -5'
32071 5' -59.2 NC_007016.1 + 99724 0.72 0.421645
Target:  5'- cGGAuauCGCaUCGUCGUGUGCG-CGCCUa -3'
miRNA:   3'- -CCU---GCGgAGCGGCAUACGCuGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 106868 0.72 0.413127
Target:  5'- ---gGCCUCGCCGgacUGUGCGACcgGCCUa -3'
miRNA:   3'- ccugCGGAGCGGC---AUACGCUG--CGGGg -5'
32071 5' -59.2 NC_007016.1 + 130188 0.72 0.413127
Target:  5'- cGGCGCCgCGCCc----CGACGCCCCc -3'
miRNA:   3'- cCUGCGGaGCGGcauacGCUGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.