miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32072 3' -48.1 NC_007016.1 + 15051 0.66 0.999247
Target:  5'- cCUGACGCCGGacgacuacgagaCGUUcgUGcUGAgcgGCGGa -3'
miRNA:   3'- aGACUGUGGUC------------GUAAa-AC-ACUa--CGCC- -5'
32072 3' -48.1 NC_007016.1 + 106541 0.66 0.998313
Target:  5'- aUCUcGGCaACCAGCGg---GUGAUuCGGa -3'
miRNA:   3'- -AGA-CUG-UGGUCGUaaaaCACUAcGCC- -5'
32072 3' -48.1 NC_007016.1 + 62589 0.66 0.998313
Target:  5'- -gUGGCGCaGGCGcgcuuggUUGUGcgGCGGg -3'
miRNA:   3'- agACUGUGgUCGUaa-----AACACuaCGCC- -5'
32072 3' -48.1 NC_007016.1 + 119604 0.67 0.997605
Target:  5'- cCUGugGCCcaggcGGCGUUggGgaagcggaggccgcgGAUGCGGa -3'
miRNA:   3'- aGACugUGG-----UCGUAAaaCa--------------CUACGCC- -5'
32072 3' -48.1 NC_007016.1 + 61357 0.67 0.997091
Target:  5'- -gUGAUACCcGCGg---GUGGUGgGGg -3'
miRNA:   3'- agACUGUGGuCGUaaaaCACUACgCC- -5'
32072 3' -48.1 NC_007016.1 + 83592 0.69 0.988545
Target:  5'- uUCUG-UACUAGUg--UUGUGAUGgGGg -3'
miRNA:   3'- -AGACuGUGGUCGuaaAACACUACgCC- -5'
32072 3' -48.1 NC_007016.1 + 116790 0.69 0.985174
Target:  5'- --cGGCACCGGCGUUaaccgGGUGCGu -3'
miRNA:   3'- agaCUGUGGUCGUAAaaca-CUACGCc -5'
32072 3' -48.1 NC_007016.1 + 77001 0.7 0.983228
Target:  5'- --aGACGCCAGCGUguuuu--UGCGGg -3'
miRNA:   3'- agaCUGUGGUCGUAaaacacuACGCC- -5'
32072 3' -48.1 NC_007016.1 + 96552 0.7 0.976228
Target:  5'- --cGACACUGGCAUg--GUGAUGUa- -3'
miRNA:   3'- agaCUGUGGUCGUAaaaCACUACGcc -5'
32072 3' -48.1 NC_007016.1 + 45049 0.75 0.831117
Target:  5'- gUCcGGCACCGGCAUcggugcgGUGAUcGCGGu -3'
miRNA:   3'- -AGaCUGUGGUCGUAaaa----CACUA-CGCC- -5'
32072 3' -48.1 NC_007016.1 + 10384 1.13 0.008162
Target:  5'- cUCUGACACCAGCAUUUUGUGAUGCGGa -3'
miRNA:   3'- -AGACUGUGGUCGUAAAACACUACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.