miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32072 5' -58.5 NC_007016.1 + 114202 0.66 0.780893
Target:  5'- uGGCgGCUcCGGGugGCUccGGGUgGGCAc -3'
miRNA:   3'- -CCGgCGGaGCUUugUGA--CCCGgUCGU- -5'
32072 5' -58.5 NC_007016.1 + 104415 0.66 0.780893
Target:  5'- cGGCaCGCC-C--AGCGcCUGGGCCAgGCGc -3'
miRNA:   3'- -CCG-GCGGaGcuUUGU-GACCCGGU-CGU- -5'
32072 5' -58.5 NC_007016.1 + 124459 0.66 0.769725
Target:  5'- uGCCGCgUCGAugcccaucuuguACGCcuguucuccgUGGGCCAcGCAu -3'
miRNA:   3'- cCGGCGgAGCUu-----------UGUG----------ACCCGGU-CGU- -5'
32072 5' -58.5 NC_007016.1 + 29089 0.66 0.751688
Target:  5'- uGGCUGCC-CGguAC-CUGGGUuuuuggaaccgggCAGCAg -3'
miRNA:   3'- -CCGGCGGaGCuuUGuGACCCG-------------GUCGU- -5'
32072 5' -58.5 NC_007016.1 + 27210 0.67 0.733274
Target:  5'- aGCC-CCUCuuGAAACACUGauGGCCAagGCGa -3'
miRNA:   3'- cCGGcGGAG--CUUUGUGAC--CCGGU--CGU- -5'
32072 5' -58.5 NC_007016.1 + 116987 0.67 0.723451
Target:  5'- aGGCCGUCUCcAGACGCgacGuGGCCAa-- -3'
miRNA:   3'- -CCGGCGGAGcUUUGUGa--C-CCGGUcgu -5'
32072 5' -58.5 NC_007016.1 + 130322 0.67 0.714544
Target:  5'- cGCCGCCgggcucggccggacCGggGCGCUcccgggagucggcgGGGcCCGGCGg -3'
miRNA:   3'- cCGGCGGa-------------GCuuUGUGA--------------CCC-GGUCGU- -5'
32072 5' -58.5 NC_007016.1 + 130508 0.67 0.713551
Target:  5'- gGGCCgGCCccgcCGAGGCGCcccGGGCCccAGCc -3'
miRNA:   3'- -CCGG-CGGa---GCUUUGUGa--CCCGG--UCGu -5'
32072 5' -58.5 NC_007016.1 + 69213 0.67 0.707577
Target:  5'- cGGCUGCaCUaauccacgcagcgucCGAAGCGuCUGuGGCCgAGCAa -3'
miRNA:   3'- -CCGGCG-GA---------------GCUUUGU-GAC-CCGG-UCGU- -5'
32072 5' -58.5 NC_007016.1 + 51138 0.67 0.703582
Target:  5'- aGGCCGCUgCGuuAAGCAUuuUGGcaGCCGGCGu -3'
miRNA:   3'- -CCGGCGGaGC--UUUGUG--ACC--CGGUCGU- -5'
32072 5' -58.5 NC_007016.1 + 16717 0.67 0.683472
Target:  5'- cGCCGCCggaaucccgUGggGCGaugaGGGCCAcGCAg -3'
miRNA:   3'- cCGGCGGa--------GCuuUGUga--CCCGGU-CGU- -5'
32072 5' -58.5 NC_007016.1 + 20542 0.67 0.683472
Target:  5'- gGGaCCGCCgCGAgggcGAC-CUGGGgCCGGUg -3'
miRNA:   3'- -CC-GGCGGaGCU----UUGuGACCC-GGUCGu -5'
32072 5' -58.5 NC_007016.1 + 20709 0.68 0.67335
Target:  5'- cGGCCGUC-CGggGCACgc-GCCgcGGCAa -3'
miRNA:   3'- -CCGGCGGaGCuuUGUGaccCGG--UCGU- -5'
32072 5' -58.5 NC_007016.1 + 31150 0.68 0.663194
Target:  5'- uGCuCGCuCUCGGAAgaaaACUGGGCCccGGUAa -3'
miRNA:   3'- cCG-GCG-GAGCUUUg---UGACCCGG--UCGU- -5'
32072 5' -58.5 NC_007016.1 + 21840 0.68 0.663194
Target:  5'- gGGuCCGCCUCGAcggaAACcagGC-GuGGCCAGCc -3'
miRNA:   3'- -CC-GGCGGAGCU----UUG---UGaC-CCGGUCGu -5'
32072 5' -58.5 NC_007016.1 + 13328 0.68 0.63261
Target:  5'- cGCCuGCCUCcGAACGCcggGGGCaGGCGg -3'
miRNA:   3'- cCGG-CGGAGcUUUGUGa--CCCGgUCGU- -5'
32072 5' -58.5 NC_007016.1 + 125245 0.68 0.621383
Target:  5'- aGGCCGCCccgCGAGAC-CaGGGCUcccagguGGCu -3'
miRNA:   3'- -CCGGCGGa--GCUUUGuGaCCCGG-------UCGu -5'
32072 5' -58.5 NC_007016.1 + 126473 0.69 0.612205
Target:  5'- aGCCuCCUCGucuGCACUaaGGGCCgcGGCGg -3'
miRNA:   3'- cCGGcGGAGCuu-UGUGA--CCCGG--UCGU- -5'
32072 5' -58.5 NC_007016.1 + 68338 0.69 0.612205
Target:  5'- cGGCCGCCaugCGGGACuCUGGaguGUUGGCGa -3'
miRNA:   3'- -CCGGCGGa--GCUUUGuGACC---CGGUCGU- -5'
32072 5' -58.5 NC_007016.1 + 40976 0.69 0.602021
Target:  5'- gGGCCGggggaaCguuaaacgCGAccggcacGCGCUGGGCCGGCAg -3'
miRNA:   3'- -CCGGCg-----Ga-------GCUu------UGUGACCCGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.