miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32073 3' -54.5 NC_007016.1 + 115888 0.66 0.947843
Target:  5'- cGCGGGuGAcCcGGcgauggCACCGCGggCGCg -3'
miRNA:   3'- -CGUCCuCUaGaCCua----GUGGCGCa-GCG- -5'
32073 3' -54.5 NC_007016.1 + 29633 0.66 0.947843
Target:  5'- --cGGAGAUcCUGGuUUACCGUGaaGCc -3'
miRNA:   3'- cguCCUCUA-GACCuAGUGGCGCagCG- -5'
32073 3' -54.5 NC_007016.1 + 65268 0.66 0.943392
Target:  5'- aGCGGG-GAugUCcGGGUggaaaccaGCCGCGUUGCc -3'
miRNA:   3'- -CGUCCuCU--AGaCCUAg-------UGGCGCAGCG- -5'
32073 3' -54.5 NC_007016.1 + 86994 0.66 0.9387
Target:  5'- aCAGGA-AUCUcGcGGUCACCuCGUUGCg -3'
miRNA:   3'- cGUCCUcUAGA-C-CUAGUGGcGCAGCG- -5'
32073 3' -54.5 NC_007016.1 + 108682 0.66 0.9387
Target:  5'- gGCGGGGcGGUCccGGugugCACCGUG-CGCc -3'
miRNA:   3'- -CGUCCU-CUAGa-CCua--GUGGCGCaGCG- -5'
32073 3' -54.5 NC_007016.1 + 15119 0.66 0.928588
Target:  5'- aGCGGGAGucucugCUGGGaagacugcuaACCGUGUgGCu -3'
miRNA:   3'- -CGUCCUCua----GACCUag--------UGGCGCAgCG- -5'
32073 3' -54.5 NC_007016.1 + 131196 0.66 0.928588
Target:  5'- -gGGGAGggCUcGGGUC-CCGUGUCc- -3'
miRNA:   3'- cgUCCUCuaGA-CCUAGuGGCGCAGcg -5'
32073 3' -54.5 NC_007016.1 + 810 0.66 0.928588
Target:  5'- -gGGGAGggCUcGGGUC-CCGUGUCc- -3'
miRNA:   3'- cgUCCUCuaGA-CCUAGuGGCGCAGcg -5'
32073 3' -54.5 NC_007016.1 + 30559 0.66 0.928056
Target:  5'- gGCAGGaAGggCUucgaGGGUCGCgGCGuguuuacauugauUCGCg -3'
miRNA:   3'- -CGUCC-UCuaGA----CCUAGUGgCGC-------------AGCG- -5'
32073 3' -54.5 NC_007016.1 + 87022 0.67 0.917499
Target:  5'- aCAuGGAGGU-UGGGUCACCcaacgGCGUuCGCc -3'
miRNA:   3'- cGU-CCUCUAgACCUAGUGG-----CGCA-GCG- -5'
32073 3' -54.5 NC_007016.1 + 103029 0.67 0.91159
Target:  5'- cGCAGGcGGUC-GGcaccAUCGCCGU-UCGCg -3'
miRNA:   3'- -CGUCCuCUAGaCC----UAGUGGCGcAGCG- -5'
32073 3' -54.5 NC_007016.1 + 59611 0.67 0.905438
Target:  5'- uCAGGGGuGUCgUGGAUCACgucaGUCGCc -3'
miRNA:   3'- cGUCCUC-UAG-ACCUAGUGgcg-CAGCG- -5'
32073 3' -54.5 NC_007016.1 + 54615 0.67 0.89242
Target:  5'- --uGGAGG-CUGG-UCAUUGuCGUCGCg -3'
miRNA:   3'- cguCCUCUaGACCuAGUGGC-GCAGCG- -5'
32073 3' -54.5 NC_007016.1 + 26210 0.68 0.863623
Target:  5'- gGCGGcGGGggCUGGAgccaccgGCUGCGUgGCa -3'
miRNA:   3'- -CGUC-CUCuaGACCUag-----UGGCGCAgCG- -5'
32073 3' -54.5 NC_007016.1 + 83415 0.68 0.855877
Target:  5'- aCGGGAGGagcgaaacUCgGGcucauUCACCGUGUCGUu -3'
miRNA:   3'- cGUCCUCU--------AGaCCu----AGUGGCGCAGCG- -5'
32073 3' -54.5 NC_007016.1 + 92639 0.69 0.814186
Target:  5'- uCAGGGGuUCUGGAaacgaaGCCaCGUCGCc -3'
miRNA:   3'- cGUCCUCuAGACCUag----UGGcGCAGCG- -5'
32073 3' -54.5 NC_007016.1 + 27356 0.7 0.787083
Target:  5'- gGCAuGGGGuuaagCUGGAUUuggGCCGC-UCGCg -3'
miRNA:   3'- -CGU-CCUCua---GACCUAG---UGGCGcAGCG- -5'
32073 3' -54.5 NC_007016.1 + 119074 0.72 0.688912
Target:  5'- gGCGGGGuGGUCUGuGuggcUCACCGCcuGUUGCg -3'
miRNA:   3'- -CGUCCU-CUAGAC-Cu---AGUGGCG--CAGCG- -5'
32073 3' -54.5 NC_007016.1 + 14302 1.13 0.001971
Target:  5'- cGCAGGAGAUCUGGAUCACCGCGUCGCc -3'
miRNA:   3'- -CGUCCUCUAGACCUAGUGGCGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.