Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32074 | 3' | -59 | NC_007016.1 | + | 15040 | 1.11 | 0.000943 |
Target: 5'- gUCGCGCCCUGAUAACCCCCCUGUCCCu -3' miRNA: 3'- -AGCGCGGGACUAUUGGGGGGACAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 130193 | 0.77 | 0.227739 |
Target: 5'- cCGCGCCCcGAc-GCCCCCCgagCCCg -3' miRNA: 3'- aGCGCGGGaCUauUGGGGGGacaGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 68000 | 0.73 | 0.352606 |
Target: 5'- cCGCaGCCC-GAUAuACCgCCCCaUGUCCCc -3' miRNA: 3'- aGCG-CGGGaCUAU-UGG-GGGG-ACAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 51284 | 0.72 | 0.409427 |
Target: 5'- gUCGCGCCCUGAUAuUCCCgCaGUUaaCCg -3' miRNA: 3'- -AGCGCGGGACUAUuGGGGgGaCAG--GG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 130492 | 0.72 | 0.426679 |
Target: 5'- -gGCGCCCcGGgccccAGCCCCCC--UCCCg -3' miRNA: 3'- agCGCGGGaCUa----UUGGGGGGacAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 123588 | 0.71 | 0.490254 |
Target: 5'- -gGcCGCCCUGAUcGCCCCCggcGcCCCg -3' miRNA: 3'- agC-GCGGGACUAuUGGGGGga-CaGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 59008 | 0.71 | 0.490254 |
Target: 5'- aCGCGUCUccuuUGAUAG-CCCCCUGUaCCg -3' miRNA: 3'- aGCGCGGG----ACUAUUgGGGGGACAgGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 38018 | 0.7 | 0.518829 |
Target: 5'- -aGgGCCCUGuucuucuGCCCgCgUGUCCCg -3' miRNA: 3'- agCgCGGGACuau----UGGGgGgACAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 21070 | 0.7 | 0.518829 |
Target: 5'- cCGCGCCUUG-UGGCCugaCCCCg--CCCa -3' miRNA: 3'- aGCGCGGGACuAUUGG---GGGGacaGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 91616 | 0.7 | 0.527532 |
Target: 5'- cCGC-CCCUGuucgGUGcccGCCCCCCaaacgcgUGUCCCc -3' miRNA: 3'- aGCGcGGGAC----UAU---UGGGGGG-------ACAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 14841 | 0.69 | 0.5678 |
Target: 5'- cCGCGgCCaggGAUAAcuuuauCCUCCCgGUCCCa -3' miRNA: 3'- aGCGCgGGa--CUAUU------GGGGGGaCAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 115457 | 0.69 | 0.597751 |
Target: 5'- cCGCGCCCggcucgGuGUGACCuCCCCgcgacCCCg -3' miRNA: 3'- aGCGCGGGa-----C-UAUUGG-GGGGaca--GGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 129874 | 0.69 | 0.607793 |
Target: 5'- -gGCGCCCggcGggGGCCCCCaggcgCCCg -3' miRNA: 3'- agCGCGGGa--CuaUUGGGGGgaca-GGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 107760 | 0.68 | 0.644037 |
Target: 5'- gCGCGCCCauuccgggGGUuGCCCCCCcaggcaccgagCCCg -3' miRNA: 3'- aGCGCGGGa-------CUAuUGGGGGGaca--------GGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 88430 | 0.68 | 0.657115 |
Target: 5'- gUCGuUGCCCUGGUAucguccuguucaaACCCCgCguuuUCCCg -3' miRNA: 3'- -AGC-GCGGGACUAU-------------UGGGGgGac--AGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 60781 | 0.67 | 0.678163 |
Target: 5'- uUCGUGuCCCUGGUAucGCCCCCUagcGUUa- -3' miRNA: 3'- -AGCGC-GGGACUAU--UGGGGGGa--CAGgg -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 101023 | 0.67 | 0.678163 |
Target: 5'- -gGCGCCCUGAUAggcACUUCUCggaaCCCg -3' miRNA: 3'- agCGCGGGACUAU---UGGGGGGaca-GGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 55970 | 0.67 | 0.688135 |
Target: 5'- -aGCGCCCUGAaaaauucGGCCagggCCCC-GUUCCa -3' miRNA: 3'- agCGCGGGACUa------UUGG----GGGGaCAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 123056 | 0.67 | 0.707933 |
Target: 5'- cUCGUGguuCCCUGAUGcguucuCCUCCagguggaUGUCCCa -3' miRNA: 3'- -AGCGC---GGGACUAUu-----GGGGGg------ACAGGG- -5' |
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32074 | 3' | -59 | NC_007016.1 | + | 51207 | 0.67 | 0.717743 |
Target: 5'- aCGCGCCCgccggGAgaAACaUCCCCUGaaCCg -3' miRNA: 3'- aGCGCGGGa----CUa-UUG-GGGGGACagGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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