miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32075 3' -61.7 NC_007016.1 + 6974 0.66 0.645079
Target:  5'- gGCagGCGCCGUgGCg--GugUUCCUGAa -3'
miRNA:   3'- -CGg-CGCGGCGgCGgaaCugGAGGACU- -5'
32075 3' -61.7 NC_007016.1 + 15900 1.1 0.000668
Target:  5'- aGCCGCGCCGCCGCCUUGACCUCCUGAu -3'
miRNA:   3'- -CGGCGCGGCGGCGGAACUGGAGGACU- -5'
32075 3' -61.7 NC_007016.1 + 16724 0.67 0.575745
Target:  5'- uCCGCGUCGCCGCCggaauCC-CgUGGg -3'
miRNA:   3'- cGGCGCGGCGGCGGaacu-GGaGgACU- -5'
32075 3' -61.7 NC_007016.1 + 20695 0.67 0.56594
Target:  5'- cGCCGUGCuCGCCGC---GGCCgUCCgGGg -3'
miRNA:   3'- -CGGCGCG-GCGGCGgaaCUGG-AGGaCU- -5'
32075 3' -61.7 NC_007016.1 + 21077 0.71 0.353685
Target:  5'- aGCCGgGCCG-CGCCUUGugg-CCUGAc -3'
miRNA:   3'- -CGGCgCGGCgGCGGAACuggaGGACU- -5'
32075 3' -61.7 NC_007016.1 + 21784 0.72 0.303217
Target:  5'- cGCCGCGCuCGCCGUgCUUGGCCacggaUGAc -3'
miRNA:   3'- -CGGCGCG-GCGGCG-GAACUGGagg--ACU- -5'
32075 3' -61.7 NC_007016.1 + 22648 0.68 0.498829
Target:  5'- aCCgGCGCCGCCGCgUggcGCCcccugCCUGGg -3'
miRNA:   3'- cGG-CGCGGCGGCGgAac-UGGa----GGACU- -5'
32075 3' -61.7 NC_007016.1 + 23032 0.68 0.480289
Target:  5'- cGCUGCGCCcaaucggcGCCGCCgguccGCCaUCUUGAc -3'
miRNA:   3'- -CGGCGCGG--------CGGCGGaac--UGG-AGGACU- -5'
32075 3' -61.7 NC_007016.1 + 36112 0.66 0.635146
Target:  5'- aCCGaGCCGcCCGCCUUGGCgCgUUUGAc -3'
miRNA:   3'- cGGCgCGGC-GGCGGAACUG-GaGGACU- -5'
32075 3' -61.7 NC_007016.1 + 71149 0.69 0.471145
Target:  5'- gGCCGaaacgGCgGCCGCgauUUUGGCCUCCUu- -3'
miRNA:   3'- -CGGCg----CGgCGGCG---GAACUGGAGGAcu -5'
32075 3' -61.7 NC_007016.1 + 76663 0.73 0.270681
Target:  5'- uGCCgGCGCCGCCGCCgcugcGACC-CgaGGu -3'
miRNA:   3'- -CGG-CGCGGCGGCGGaa---CUGGaGgaCU- -5'
32075 3' -61.7 NC_007016.1 + 78743 0.66 0.614288
Target:  5'- aUCGCGCCcaauagGCgCGCCUUGGCCUggcacagCCUa- -3'
miRNA:   3'- cGGCGCGG------CG-GCGGAACUGGA-------GGAcu -5'
32075 3' -61.7 NC_007016.1 + 81819 0.67 0.56594
Target:  5'- cGCCGCGUgcaCGCUaauccaaaCCUUGuccaaguuACCUCCUGAg -3'
miRNA:   3'- -CGGCGCG---GCGGc-------GGAAC--------UGGAGGACU- -5'
32075 3' -61.7 NC_007016.1 + 88242 0.68 0.480289
Target:  5'- aCCGCGCCGCaccacuaGCCUccGCCggagCUUGAg -3'
miRNA:   3'- cGGCGCGGCGg------CGGAacUGGa---GGACU- -5'
32075 3' -61.7 NC_007016.1 + 102656 0.67 0.575745
Target:  5'- aGCCGUuCgGCCGCCgagaugcUGGCCUCUa-- -3'
miRNA:   3'- -CGGCGcGgCGGCGGa------ACUGGAGGacu -5'
32075 3' -61.7 NC_007016.1 + 106471 0.66 0.595462
Target:  5'- gGCUcCGCCGCCccgagcguuGCCccggUGGCCUCCa-- -3'
miRNA:   3'- -CGGcGCGGCGG---------CGGa---ACUGGAGGacu -5'
32075 3' -61.7 NC_007016.1 + 115456 0.66 0.635146
Target:  5'- cCCGCGCC-CgGCUcggugUGACCUCCc-- -3'
miRNA:   3'- cGGCGCGGcGgCGGa----ACUGGAGGacu -5'
32075 3' -61.7 NC_007016.1 + 116437 0.69 0.462091
Target:  5'- gGCCGCGCCGCCaagcggcgcgGCU---GCCUCCc-- -3'
miRNA:   3'- -CGGCGCGGCGG----------CGGaacUGGAGGacu -5'
32075 3' -61.7 NC_007016.1 + 116591 0.66 0.605362
Target:  5'- aGCCGCGCCGCuuggCGgCgcGGCCggUUCUGGg -3'
miRNA:   3'- -CGGCGCGGCG----GCgGaaCUGG--AGGACU- -5'
32075 3' -61.7 NC_007016.1 + 117396 0.67 0.546467
Target:  5'- gGCCGUGCUGUgGCUuuUUGACCggCCg-- -3'
miRNA:   3'- -CGGCGCGGCGgCGG--AACUGGa-GGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.