miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32076 3' -53.4 NC_007016.1 + 20208 0.79 0.3468
Target:  5'- -aGGGCcaUCCUCGCAAGgUCCGCGGg -3'
miRNA:   3'- cgCUCGaaAGGGGUGUUUgAGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 61194 0.66 0.968505
Target:  5'- cGUGuGCagUCCCC-CAccAC-CCGCGGg -3'
miRNA:   3'- -CGCuCGaaAGGGGuGUu-UGaGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 33901 0.66 0.965314
Target:  5'- aCGAGUUUUCCgUCAuaaauugcacCAGACUgCGUGGa -3'
miRNA:   3'- cGCUCGAAAGG-GGU----------GUUUGAgGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 16551 0.66 0.965314
Target:  5'- uGCGuGGCccucaucgCCCCACGgGAUUCCgGCGGc -3'
miRNA:   3'- -CGC-UCGaaa-----GGGGUGU-UUGAGG-CGCC- -5'
32076 3' -53.4 NC_007016.1 + 101019 0.66 0.958266
Target:  5'- cGCGGGCg--CCCUgauagGCAcuucucggAAC-CCGCGGu -3'
miRNA:   3'- -CGCUCGaaaGGGG-----UGU--------UUGaGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 27386 0.66 0.954398
Target:  5'- cGCGAGUc--CCCCGCGAg--CCGUGa -3'
miRNA:   3'- -CGCUCGaaaGGGGUGUUugaGGCGCc -5'
32076 3' -53.4 NC_007016.1 + 90863 0.67 0.941368
Target:  5'- uGCG-GCUUUCCuuCCGCGuucGACUcguccCCGUGGu -3'
miRNA:   3'- -CGCuCGAAAGG--GGUGU---UUGA-----GGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 92873 0.67 0.930941
Target:  5'- gGCGAuGCUgcgCCCCAgcuGCUCCcaucuuuccaaggGCGGg -3'
miRNA:   3'- -CGCU-CGAaa-GGGGUguuUGAGG-------------CGCC- -5'
32076 3' -53.4 NC_007016.1 + 65242 0.68 0.914752
Target:  5'- gGCGAGCgg-CCCCAC--ACUgCUGCu- -3'
miRNA:   3'- -CGCUCGaaaGGGGUGuuUGA-GGCGcc -5'
32076 3' -53.4 NC_007016.1 + 22401 0.68 0.902383
Target:  5'- cGCGGGCg--UUCCGCGugUUuuGCGGg -3'
miRNA:   3'- -CGCUCGaaaGGGGUGUuuGAggCGCC- -5'
32076 3' -53.4 NC_007016.1 + 17936 0.68 0.902383
Target:  5'- uGCGAGUUcacgCgCCGCGAACgaCGCGGu -3'
miRNA:   3'- -CGCUCGAaa--GgGGUGUUUGagGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 45074 0.74 0.640846
Target:  5'- gGC-AGCgucCCCCAUuAGCUCCGUGGa -3'
miRNA:   3'- -CGcUCGaaaGGGGUGuUUGAGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 130210 0.73 0.672
Target:  5'- cCGAGCccggggCCCCACAAg--CCGCGGc -3'
miRNA:   3'- cGCUCGaaa---GGGGUGUUugaGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 17415 0.73 0.702851
Target:  5'- uGCGAGUaagCUCCGCcGACgacgcgCCGCGGg -3'
miRNA:   3'- -CGCUCGaaaGGGGUGuUUGa-----GGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 7747 0.72 0.723125
Target:  5'- cCGAGgaauacCCCCACGugcuaGGCUCCGCGGc -3'
miRNA:   3'- cGCUCgaaa--GGGGUGU-----UUGAGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 115888 0.71 0.80021
Target:  5'- cGCGGGUga-CCCgGCGAugGCaCCGCGGg -3'
miRNA:   3'- -CGCUCGaaaGGGgUGUU--UGaGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 14509 0.69 0.862714
Target:  5'- aGCGGGCaucgUCCCCAUAGACauguaccaggugugUCGCGa -3'
miRNA:   3'- -CGCUCGaa--AGGGGUGUUUGa-------------GGCGCc -5'
32076 3' -53.4 NC_007016.1 + 91730 0.69 0.882028
Target:  5'- aGCcaGGCacaCCCCGCGcauGACUCCGCGa -3'
miRNA:   3'- -CGc-UCGaaaGGGGUGU---UUGAGGCGCc -5'
32076 3' -53.4 NC_007016.1 + 19481 0.66 0.968505
Target:  5'- uCGAGUgccagCgCCGCGAGUUUCGCGGg -3'
miRNA:   3'- cGCUCGaaa--GgGGUGUUUGAGGCGCC- -5'
32076 3' -53.4 NC_007016.1 + 19361 0.76 0.507761
Target:  5'- cGCGGGCg--CCgcggCCAUcgGCUCCGCGGu -3'
miRNA:   3'- -CGCUCGaaaGG----GGUGuuUGAGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.