miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32077 3' -52.3 NC_007016.1 + 84962 0.66 0.965099
Target:  5'- uUCAUCUGAcaGAACGGCCaaagcagcaCACgUGUGc -3'
miRNA:   3'- cAGUAGGCU--UUUGCCGGa--------GUGgACAU- -5'
32077 3' -52.3 NC_007016.1 + 116840 0.66 0.957806
Target:  5'- -gCGUCUGGAGACGGCCUgCAgCa--- -3'
miRNA:   3'- caGUAGGCUUUUGCCGGA-GUgGacau -5'
32077 3' -52.3 NC_007016.1 + 7804 0.67 0.940246
Target:  5'- --uGUCCGAAAuacGCGGCCgCACCg--- -3'
miRNA:   3'- cagUAGGCUUU---UGCCGGaGUGGacau -5'
32077 3' -52.3 NC_007016.1 + 59066 0.68 0.924368
Target:  5'- cGUCAcgucUCCGGAAGCGugcguuuuCCUCAUCUGUu -3'
miRNA:   3'- -CAGU----AGGCUUUUGCc-------GGAGUGGACAu -5'
32077 3' -52.3 NC_007016.1 + 51236 0.68 0.923799
Target:  5'- -gCGUCCGAGcacGGCGGUCcaguccgUCGCCUGg- -3'
miRNA:   3'- caGUAGGCUU---UUGCCGG-------AGUGGACau -5'
32077 3' -52.3 NC_007016.1 + 11369 0.69 0.878261
Target:  5'- cGUCGcugauaaagCCGAAAACGGCCUCGgC-GUGc -3'
miRNA:   3'- -CAGUa--------GGCUUUUGCCGGAGUgGaCAU- -5'
32077 3' -52.3 NC_007016.1 + 14935 0.7 0.846552
Target:  5'- -cCGUCCGuuAGGACGcGCCUgGCCUGa- -3'
miRNA:   3'- caGUAGGC--UUUUGC-CGGAgUGGACau -5'
32077 3' -52.3 NC_007016.1 + 13708 0.7 0.834624
Target:  5'- -cCGUCUGGAAGCGGCUcgguaccucggcgCACCUGUc -3'
miRNA:   3'- caGUAGGCUUUUGCCGGa------------GUGGACAu -5'
32077 3' -52.3 NC_007016.1 + 73786 0.71 0.78321
Target:  5'- uGUUAUCCGAggucAAugGuGCgUCACCUGUu -3'
miRNA:   3'- -CAGUAGGCU----UUugC-CGgAGUGGACAu -5'
32077 3' -52.3 NC_007016.1 + 73506 0.73 0.670407
Target:  5'- uUCGUCUGgcAAUGGCCgCACCUGg- -3'
miRNA:   3'- cAGUAGGCuuUUGCCGGaGUGGACau -5'
32077 3' -52.3 NC_007016.1 + 17068 1.08 0.006037
Target:  5'- cGUCAUCCGAAAACGGCCUCACCUGUAa -3'
miRNA:   3'- -CAGUAGGCUUUUGCCGGAGUGGACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.