miRNA: 3'- acgACCCCGU-GCgGCCGUCUGUGCCU- -5'
miRNA: 3'- aCGaCC-CCG-UGCGGCCGUCUGUGccu -5'
miRNA: 3'- aC-GACC-CCG---------UGCGGCCGUCUgUGCCU- -5'
miRNA: 3'- -ACGACCCCGUGCGGCCGUCUGUGCCU- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32079 | 3' | -62.3 | NC_007016.1 | + | 118850 | 0.73 | 0.247465 |
|
Target: 5'- --aUGGGGUAuCG-CGGCGGGCGCGGGg -3' miRNA: 3'- acgACCCCGU-GCgGCCGUCUGUGCCU- -5' |
|||||||
| 32079 | 3' | -62.3 | NC_007016.1 | + | 76811 | 0.74 | 0.209596 |
|
Target: 5'- aGC-GGcGGCgGCGCCGGCAGGCACa-- -3' miRNA: 3'- aCGaCC-CCG-UGCGGCCGUCUGUGccu -5' |
|||||||
| 32079 | 3' | -62.3 | NC_007016.1 | + | 13442 | 0.75 | 0.181215 |
|
Target: 5'- cGuCUGGuGGCggcugaacgGCGCCGGCGGGgGCGGGc -3' miRNA: 3'- aC-GACC-CCG---------UGCGGCCGUCUgUGCCU- -5' |
|||||||
| 32079 | 3' | -62.3 | NC_007016.1 | + | 17907 | 1.08 | 0.000677 |
|
Target: 5'- aUGCUGGGGCACGCCGGCAGACACGGAg -3' miRNA: 3'- -ACGACCCCGUGCGGCCGUCUGUGCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home