miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32080 3' -61.7 NC_007016.1 + 17912 0.7 0.411594
Target:  5'- --aGCGCGCg-GACCGCGaGCuGGUGCu -3'
miRNA:   3'- aggCGCGCGagCUGGUGC-CGcCCAUG- -5'
32080 3' -61.7 NC_007016.1 + 14813 0.66 0.643211
Target:  5'- cUUCGCGUGUUCuccugccuguuggaGGCCGCGGCcaGGGa-- -3'
miRNA:   3'- -AGGCGCGCGAG--------------CUGGUGCCG--CCCaug -5'
32080 3' -61.7 NC_007016.1 + 115329 0.66 0.636286
Target:  5'- gCCGCGCGUcgguuugaUUGACgGCucGGCGGGc-- -3'
miRNA:   3'- aGGCGCGCG--------AGCUGgUG--CCGCCCaug -5'
32080 3' -61.7 NC_007016.1 + 130063 0.66 0.62639
Target:  5'- gCCGCGCGC-CgGGCCGCuuucgguucGCGGGgcCg -3'
miRNA:   3'- aGGCGCGCGaG-CUGGUGc--------CGCCCauG- -5'
32080 3' -61.7 NC_007016.1 + 51088 0.66 0.606619
Target:  5'- aCCGcCGUGCUCGGaCGCGGCucGUAUg -3'
miRNA:   3'- aGGC-GCGCGAGCUgGUGCCGccCAUG- -5'
32080 3' -61.7 NC_007016.1 + 39551 0.67 0.586919
Target:  5'- gCCGCGUauaggGCUacccacagGACUAUGGUGGGUAa -3'
miRNA:   3'- aGGCGCG-----CGAg-------CUGGUGCCGCCCAUg -5'
32080 3' -61.7 NC_007016.1 + 21785 0.67 0.585937
Target:  5'- gCCGCGCucgccguGCUUGGCCACGGaugaCGGcGUcCa -3'
miRNA:   3'- aGGCGCG-------CGAGCUGGUGCC----GCC-CAuG- -5'
32080 3' -61.7 NC_007016.1 + 62597 0.67 0.577112
Target:  5'- --gGCGCGCUUGGUUguGCGGCGGG-ACc -3'
miRNA:   3'- aggCGCGCGAGCUGG--UGCCGCCCaUG- -5'
32080 3' -61.7 NC_007016.1 + 20693 0.67 0.547934
Target:  5'- cUCGcCGUGCUCG-CCGCGGCcguccgGGGcACg -3'
miRNA:   3'- aGGC-GCGCGAGCuGGUGCCG------CCCaUG- -5'
32080 3' -61.7 NC_007016.1 + 123437 0.68 0.500435
Target:  5'- gCCGgGgGCgaucagggCGGCCACGGCcGGUGg -3'
miRNA:   3'- aGGCgCgCGa-------GCUGGUGCCGcCCAUg -5'
32080 3' -61.7 NC_007016.1 + 18734 0.68 0.491148
Target:  5'- aUCgCGCGCGCUgGAgCUGCcuGGCGGGg-- -3'
miRNA:   3'- -AG-GCGCGCGAgCU-GGUG--CCGCCCaug -5'
32080 3' -61.7 NC_007016.1 + 120482 0.69 0.437243
Target:  5'- cUgGCGaCGCUCG-CCACGGUucGGUGCg -3'
miRNA:   3'- aGgCGC-GCGAGCuGGUGCCGc-CCAUG- -5'
32080 3' -61.7 NC_007016.1 + 21500 0.7 0.428591
Target:  5'- aUUgGCGCacaGCUucUGACCGCGGUGGGUc- -3'
miRNA:   3'- -AGgCGCG---CGA--GCUGGUGCCGCCCAug -5'
32080 3' -61.7 NC_007016.1 + 74426 0.69 0.454844
Target:  5'- aUCCGCuucuaaGCGC-CGACacagcuGCGGCGGGUu- -3'
miRNA:   3'- -AGGCG------CGCGaGCUGg-----UGCCGCCCAug -5'
32080 3' -61.7 NC_007016.1 + 120430 0.69 0.437243
Target:  5'- gCCGCG-GCUCaccGCCGCGGCGGa--- -3'
miRNA:   3'- aGGCGCgCGAGc--UGGUGCCGCCcaug -5'
32080 3' -61.7 NC_007016.1 + 13546 0.7 0.42004
Target:  5'- cUCCGCGCGCgcCGuuuucaaaguACguCGGCGGGaACg -3'
miRNA:   3'- -AGGCGCGCGa-GC----------UGguGCCGCCCaUG- -5'
32080 3' -61.7 NC_007016.1 + 46998 0.71 0.370985
Target:  5'- cCCGgGCGUUCGAgCgCACGGUGGuGUGu -3'
miRNA:   3'- aGGCgCGCGAGCU-G-GUGCCGCC-CAUg -5'
32080 3' -61.7 NC_007016.1 + 49630 0.72 0.311914
Target:  5'- cCUGCGCGCggucaCGG--ACGGUGGGUGCg -3'
miRNA:   3'- aGGCGCGCGa----GCUggUGCCGCCCAUG- -5'
32080 3' -61.7 NC_007016.1 + 104427 0.72 0.311914
Target:  5'- cCCGUGgGCUgucCGuACUcguACGGCGGGUGCu -3'
miRNA:   3'- aGGCGCgCGA---GC-UGG---UGCCGCCCAUG- -5'
32080 3' -61.7 NC_007016.1 + 120277 0.66 0.656059
Target:  5'- gCCGCGCGCUg---CGCGGCGGa--- -3'
miRNA:   3'- aGGCGCGCGAgcugGUGCCGCCcaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.