Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32080 | 3' | -61.7 | NC_007016.1 | + | 74426 | 0.69 | 0.454844 |
Target: 5'- aUCCGCuucuaaGCGC-CGACacagcuGCGGCGGGUu- -3' miRNA: 3'- -AGGCG------CGCGaGCUGg-----UGCCGCCCAug -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 120482 | 0.69 | 0.437243 |
Target: 5'- cUgGCGaCGCUCG-CCACGGUucGGUGCg -3' miRNA: 3'- aGgCGC-GCGAGCuGGUGCCGc-CCAUG- -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 120430 | 0.69 | 0.437243 |
Target: 5'- gCCGCG-GCUCaccGCCGCGGCGGa--- -3' miRNA: 3'- aGGCGCgCGAGc--UGGUGCCGCCcaug -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 21500 | 0.7 | 0.428591 |
Target: 5'- aUUgGCGCacaGCUucUGACCGCGGUGGGUc- -3' miRNA: 3'- -AGgCGCG---CGA--GCUGGUGCCGCCCAug -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 13546 | 0.7 | 0.42004 |
Target: 5'- cUCCGCGCGCgcCGuuuucaaaguACguCGGCGGGaACg -3' miRNA: 3'- -AGGCGCGCGa-GC----------UGguGCCGCCCaUG- -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 17912 | 0.7 | 0.411594 |
Target: 5'- --aGCGCGCg-GACCGCGaGCuGGUGCu -3' miRNA: 3'- aggCGCGCGagCUGGUGC-CGcCCAUG- -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 46998 | 0.71 | 0.370985 |
Target: 5'- cCCGgGCGUUCGAgCgCACGGUGGuGUGu -3' miRNA: 3'- aGGCgCGCGAGCU-G-GUGCCGCC-CAUg -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 104427 | 0.72 | 0.311914 |
Target: 5'- cCCGUGgGCUgucCGuACUcguACGGCGGGUGCu -3' miRNA: 3'- aGGCGCgCGA---GC-UGG---UGCCGCCCAUG- -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 49630 | 0.72 | 0.311914 |
Target: 5'- cCUGCGCGCggucaCGG--ACGGUGGGUGCg -3' miRNA: 3'- aGGCGCGCGa----GCUggUGCCGCCCAUG- -5' |
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32080 | 3' | -61.7 | NC_007016.1 | + | 18052 | 1.1 | 0.000728 |
Target: 5'- gUCCGCGCGCUCGACCACGGCGGGUACg -3' miRNA: 3'- -AGGCGCGCGAGCUGGUGCCGCCCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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