miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32081 3' -58.4 NC_007016.1 + 124583 0.66 0.82911
Target:  5'- uGCCUGGUgaUCgGUUGGGGgcgauguaUGGgcACCCg -3'
miRNA:   3'- gCGGACCAa-AGgCAGCUCC--------GCC--UGGG- -5'
32081 3' -58.4 NC_007016.1 + 12616 0.66 0.819116
Target:  5'- cCGCCUGGcacgcgaccugUCCGauauaGucGCGGACCUg -3'
miRNA:   3'- -GCGGACCaa---------AGGCag---CucCGCCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 41092 0.66 0.812322
Target:  5'- aGCCgucGGUUaUgCGUCGggaagucaGGGCGGACgCa -3'
miRNA:   3'- gCGGa--CCAA-AgGCAGC--------UCCGCCUGgG- -5'
32081 3' -58.4 NC_007016.1 + 126137 0.66 0.803688
Target:  5'- cCGCCUGGagaCCGUUGccGGagaGaGACCCa -3'
miRNA:   3'- -GCGGACCaaaGGCAGCu-CCg--C-CUGGG- -5'
32081 3' -58.4 NC_007016.1 + 73691 0.66 0.803688
Target:  5'- cCGCCUGGg---CGUCu-GGCGGGCa- -3'
miRNA:   3'- -GCGGACCaaagGCAGcuCCGCCUGgg -5'
32081 3' -58.4 NC_007016.1 + 5695 0.66 0.794906
Target:  5'- -uCCagagGGUUccauaugCCGU-GAGGUGGACCCg -3'
miRNA:   3'- gcGGa---CCAAa------GGCAgCUCCGCCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 10910 0.66 0.785982
Target:  5'- aCGCCUcggcccugggugGGUUUUCGg-GAGGUgugggcgucgacGGGCCCg -3'
miRNA:   3'- -GCGGA------------CCAAAGGCagCUCCG------------CCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 130516 0.67 0.776926
Target:  5'- gCGCCccgGGgccggccCCGcCGAGGCgccccGGGCCCc -3'
miRNA:   3'- -GCGGa--CCaaa----GGCaGCUCCG-----CCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 130358 0.67 0.749046
Target:  5'- gCGCCUcGGcggggCCGgcccCGGGGCGcGACCg -3'
miRNA:   3'- -GCGGA-CCaaa--GGCa---GCUCCGC-CUGGg -5'
32081 3' -58.4 NC_007016.1 + 17842 0.67 0.729952
Target:  5'- uGUCaGGUagCCGUCGuggauaguGGCGG-CCCa -3'
miRNA:   3'- gCGGaCCAaaGGCAGCu-------CCGCCuGGG- -5'
32081 3' -58.4 NC_007016.1 + 13443 0.68 0.717363
Target:  5'- aCGUCUGGUggcggcugaacggcgCCGgcgGGGGCGGGCgCa -3'
miRNA:   3'- -GCGGACCAaa-------------GGCag-CUCCGCCUGgG- -5'
32081 3' -58.4 NC_007016.1 + 78000 0.68 0.710534
Target:  5'- gGCCUGGUcccuauaCGagGAGGaGGACCUa -3'
miRNA:   3'- gCGGACCAaag----GCagCUCCgCCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 130030 0.68 0.710534
Target:  5'- gCGCCUGGgggcccCCGcCGGGcGCcgccgcuagGGGCCCu -3'
miRNA:   3'- -GCGGACCaaa---GGCaGCUC-CG---------CCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 119209 0.69 0.661018
Target:  5'- cCGCC-GGg--CCGUCucGGCcaGGACCCc -3'
miRNA:   3'- -GCGGaCCaaaGGCAGcuCCG--CCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 110705 0.69 0.640998
Target:  5'- uGCCUGGaugCCGguugCGuGGacugGGGCCCg -3'
miRNA:   3'- gCGGACCaaaGGCa---GCuCCg---CCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 89639 0.7 0.561225
Target:  5'- gCGCUgcGGUcacaUCCGcuuuaCGAGGCGGGCCUg -3'
miRNA:   3'- -GCGGa-CCAa---AGGCa----GCUCCGCCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 41935 0.72 0.475131
Target:  5'- uCGCgCUGGUggcaggcgUUCCcgUGAGGCGGGCCg -3'
miRNA:   3'- -GCG-GACCA--------AAGGcaGCUCCGCCUGGg -5'
32081 3' -58.4 NC_007016.1 + 51670 0.72 0.465956
Target:  5'- gGUCcaaggGGUUcCCGUguguaaaGAGGCGGACCCu -3'
miRNA:   3'- gCGGa----CCAAaGGCAg------CUCCGCCUGGG- -5'
32081 3' -58.4 NC_007016.1 + 104344 0.76 0.291375
Target:  5'- aCGCCgGGUgUCCGcuuUUGAGGCGGugCUc -3'
miRNA:   3'- -GCGGaCCAaAGGC---AGCUCCGCCugGG- -5'
32081 3' -58.4 NC_007016.1 + 21996 1.13 0.00101
Target:  5'- aCGCCUGGUUUCCGUCGAGGCGGACCCg -3'
miRNA:   3'- -GCGGACCAAAGGCAGCUCCGCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.