miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32081 5' -57.3 NC_007016.1 + 124478 0.66 0.807226
Target:  5'- uUGuACGCCuGUUcUCCGUGGgCCAcGCa -3'
miRNA:   3'- uACcUGCGG-CAGuAGGCACC-GGUuCG- -5'
32081 5' -57.3 NC_007016.1 + 41559 0.66 0.807226
Target:  5'- --cGugGCCaGcUGUCCGUGGCUGAGUc -3'
miRNA:   3'- uacCugCGG-CaGUAGGCACCGGUUCG- -5'
32081 5' -57.3 NC_007016.1 + 41318 0.66 0.807226
Target:  5'- -cGGAUGCCaacgauucgGUgGUCCG-GGCCAGauucGCg -3'
miRNA:   3'- uaCCUGCGG---------CAgUAGGCaCCGGUU----CG- -5'
32081 5' -57.3 NC_007016.1 + 51878 0.66 0.798267
Target:  5'- -gGGACGacaUGUCAaUCGUgaGGCCGAGUu -3'
miRNA:   3'- uaCCUGCg--GCAGUaGGCA--CCGGUUCG- -5'
32081 5' -57.3 NC_007016.1 + 11752 0.67 0.789156
Target:  5'- -aGGuuGCCGUCAcgUCGuUGGCCAcgaAGUg -3'
miRNA:   3'- uaCCugCGGCAGUa-GGC-ACCGGU---UCG- -5'
32081 5' -57.3 NC_007016.1 + 80882 0.67 0.779902
Target:  5'- uGUGGagGCGCCGUCccGUCCcgagguguucUGGCCAuGCc -3'
miRNA:   3'- -UACC--UGCGGCAG--UAGGc---------ACCGGUuCG- -5'
32081 5' -57.3 NC_007016.1 + 122374 0.67 0.770515
Target:  5'- -gGGACGUaaUCAg-CGUGGCCAuGCa -3'
miRNA:   3'- uaCCUGCGgcAGUagGCACCGGUuCG- -5'
32081 5' -57.3 NC_007016.1 + 116133 0.67 0.74164
Target:  5'- -cGGugGCCGggCAgaggCCGgccGGCCAaaGGUg -3'
miRNA:   3'- uaCCugCGGCa-GUa---GGCa--CCGGU--UCG- -5'
32081 5' -57.3 NC_007016.1 + 123613 0.67 0.738701
Target:  5'- -cGG-UGCCGUCGaggccaccggCCGUGGCCGcccugaucgcccccGGCg -3'
miRNA:   3'- uaCCuGCGGCAGUa---------GGCACCGGU--------------UCG- -5'
32081 5' -57.3 NC_007016.1 + 78453 0.68 0.70183
Target:  5'- -cGGACGCC----UCgGUGGCCGGGg -3'
miRNA:   3'- uaCCUGCGGcaguAGgCACCGGUUCg -5'
32081 5' -57.3 NC_007016.1 + 115701 0.69 0.671316
Target:  5'- uUGG-CGCCGgggUCAUCCGgcGGUCAGcGCa -3'
miRNA:   3'- uACCuGCGGC---AGUAGGCa-CCGGUU-CG- -5'
32081 5' -57.3 NC_007016.1 + 77605 0.69 0.661068
Target:  5'- -cGGAagUGCCacaUCGaaCCGUGGCCGGGCg -3'
miRNA:   3'- uaCCU--GCGGc--AGUa-GGCACCGGUUCG- -5'
32081 5' -57.3 NC_007016.1 + 12663 0.69 0.64051
Target:  5'- uUGGcCGCacgGUCGUUaaCGUGGCCAguAGCg -3'
miRNA:   3'- uACCuGCGg--CAGUAG--GCACCGGU--UCG- -5'
32081 5' -57.3 NC_007016.1 + 13907 0.7 0.599379
Target:  5'- cGUGGACGCCGUUcgCCGguucguccUGGaucaCGGGUu -3'
miRNA:   3'- -UACCUGCGGCAGuaGGC--------ACCg---GUUCG- -5'
32081 5' -57.3 NC_007016.1 + 37752 0.7 0.589138
Target:  5'- -cGaGACGUuuucaagaaucuCGUUAUUgGUGGCCAGGCa -3'
miRNA:   3'- uaC-CUGCG------------GCAGUAGgCACCGGUUCG- -5'
32081 5' -57.3 NC_007016.1 + 101307 0.7 0.578929
Target:  5'- -aGGAUGCCGUCgAUCU-UGGCCAGa- -3'
miRNA:   3'- uaCCUGCGGCAG-UAGGcACCGGUUcg -5'
32081 5' -57.3 NC_007016.1 + 101861 0.71 0.508894
Target:  5'- -cGGACgGCCGUUGcUCGUGGCCGucgaauugGGCg -3'
miRNA:   3'- uaCCUG-CGGCAGUaGGCACCGGU--------UCG- -5'
32081 5' -57.3 NC_007016.1 + 17887 0.72 0.470487
Target:  5'- cUGGACaUCGUacCcgCCGUGGUCGAGCg -3'
miRNA:   3'- uACCUGcGGCA--GuaGGCACCGGUUCG- -5'
32081 5' -57.3 NC_007016.1 + 40146 0.72 0.461116
Target:  5'- -cGGACGCUGgccugCGUCCcaccaccucGUGGCCA-GCa -3'
miRNA:   3'- uaCCUGCGGCa----GUAGG---------CACCGGUuCG- -5'
32081 5' -57.3 NC_007016.1 + 13593 0.73 0.424656
Target:  5'- uUGGccgcGCGCCGUCcacauggaccGUUCGUGGgCGAGCa -3'
miRNA:   3'- uACC----UGCGGCAG----------UAGGCACCgGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.