miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32083 3' -47.7 NC_007016.1 + 127240 0.67 0.99781
Target:  5'- --cACAAGACacuaCAGCGgGCCCGUccacGGu -3'
miRNA:   3'- auuUGUUUUGg---GUUGCgCGGGUAa---CC- -5'
32083 3' -47.7 NC_007016.1 + 22339 0.67 0.99781
Target:  5'- gAGACAAcgcGCCCccaGACGCgcgggGCCCuUUGGg -3'
miRNA:   3'- aUUUGUUu--UGGG---UUGCG-----CGGGuAACC- -5'
32083 3' -47.7 NC_007016.1 + 36122 0.67 0.99781
Target:  5'- gGAGCccuGAACCgAGC-CGCCCGccUUGGc -3'
miRNA:   3'- aUUUGu--UUUGGgUUGcGCGGGU--AACC- -5'
32083 3' -47.7 NC_007016.1 + 22871 0.67 0.99781
Target:  5'- -uGGCGGA--CCGGCgGCGCCgAUUGGg -3'
miRNA:   3'- auUUGUUUugGGUUG-CGCGGgUAACC- -5'
32083 3' -47.7 NC_007016.1 + 94385 0.67 0.99781
Target:  5'- ----gAGAACCCAugGCucuucGCCCAUUu- -3'
miRNA:   3'- auuugUUUUGGGUugCG-----CGGGUAAcc -5'
32083 3' -47.7 NC_007016.1 + 103260 0.67 0.997377
Target:  5'- aAAACGu--UCCGGCGCGCCUcgcgaUGGa -3'
miRNA:   3'- aUUUGUuuuGGGUUGCGCGGGua---ACC- -5'
32083 3' -47.7 NC_007016.1 + 52400 0.67 0.997377
Target:  5'- aAAACGc--CCUAACGCGCUCAUg-- -3'
miRNA:   3'- aUUUGUuuuGGGUUGCGCGGGUAacc -5'
32083 3' -47.7 NC_007016.1 + 28974 0.67 0.997233
Target:  5'- cUAGACA--GCCCAgcgccgauaggccgGCGCGaagguUCCAUUGGu -3'
miRNA:   3'- -AUUUGUuuUGGGU--------------UGCGC-----GGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 90009 0.67 0.996874
Target:  5'- cGAGCGAcGCCUccgacguguACGUGCCCA-UGGc -3'
miRNA:   3'- aUUUGUUuUGGGu--------UGCGCGGGUaACC- -5'
32083 3' -47.7 NC_007016.1 + 130213 0.68 0.996294
Target:  5'- aAAGCG--GCCCGGCGCGCggcgcggggcggCCGggGGc -3'
miRNA:   3'- aUUUGUuuUGGGUUGCGCG------------GGUaaCC- -5'
32083 3' -47.7 NC_007016.1 + 38898 0.68 0.996294
Target:  5'- gUGGACcgu-CCCAACGCGCagcccaCGUUGa -3'
miRNA:   3'- -AUUUGuuuuGGGUUGCGCGg-----GUAACc -5'
32083 3' -47.7 NC_007016.1 + 129853 0.68 0.996294
Target:  5'- cAGGCGAgGGCCCcuagcGGCgGCGCCCGgcgGGg -3'
miRNA:   3'- aUUUGUU-UUGGG-----UUG-CGCGGGUaa-CC- -5'
32083 3' -47.7 NC_007016.1 + 85863 0.68 0.994868
Target:  5'- cGAGCAAGGCCgGGgGCGUCUcugGGg -3'
miRNA:   3'- aUUUGUUUUGGgUUgCGCGGGuaaCC- -5'
32083 3' -47.7 NC_007016.1 + 123417 0.68 0.994868
Target:  5'- -cGugGGGGCCCGAUGCGCaauCAU-GGg -3'
miRNA:   3'- auUugUUUUGGGUUGCGCGg--GUAaCC- -5'
32083 3' -47.7 NC_007016.1 + 96949 0.68 0.994868
Target:  5'- cGAACAGAGCgau-CGCGCCCuaUGGc -3'
miRNA:   3'- aUUUGUUUUGgguuGCGCGGGuaACC- -5'
32083 3' -47.7 NC_007016.1 + 71122 0.68 0.994787
Target:  5'- cGGACGGGgcGCUCAggaggcgGCGCGCCCAguccaGGa -3'
miRNA:   3'- aUUUGUUU--UGGGU-------UGCGCGGGUaa---CC- -5'
32083 3' -47.7 NC_007016.1 + 22165 0.68 0.993027
Target:  5'- --cGCGGGGCCCAaagggccccGCGCGUCUGggGGc -3'
miRNA:   3'- auuUGUUUUGGGU---------UGCGCGGGUaaCC- -5'
32083 3' -47.7 NC_007016.1 + 16010 0.68 0.992711
Target:  5'- -cGAUAGAAUCCccuacguguucgugGACGCGCCCg--GGg -3'
miRNA:   3'- auUUGUUUUGGG--------------UUGCGCGGGuaaCC- -5'
32083 3' -47.7 NC_007016.1 + 28897 0.69 0.991927
Target:  5'- gGAGCGAGGCCagguuGAgGCGCCgGUgGGg -3'
miRNA:   3'- aUUUGUUUUGGg----UUgCGCGGgUAaCC- -5'
32083 3' -47.7 NC_007016.1 + 130531 0.69 0.991927
Target:  5'- ---cCGGGGCCCucgguCGCGCCCcg-GGg -3'
miRNA:   3'- auuuGUUUUGGGuu---GCGCGGGuaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.