miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32083 5' -51.8 NC_007016.1 + 44901 0.66 0.979577
Target:  5'- -aCCGAUgccgugccGGACGCGUCGGUguugUUgGUGUa -3'
miRNA:   3'- caGGUUA--------CCUGCGCGGCCA----AAgUAUA- -5'
32083 5' -51.8 NC_007016.1 + 103419 0.66 0.974525
Target:  5'- aGUCCAucgcGaGGCGCGCCGGaacguUUUCGg-- -3'
miRNA:   3'- -CAGGUua--C-CUGCGCGGCC-----AAAGUaua -5'
32083 5' -51.8 NC_007016.1 + 46261 0.66 0.971683
Target:  5'- --gCAAUGGAUGCGCaUGGUcUCAa-- -3'
miRNA:   3'- cagGUUACCUGCGCG-GCCAaAGUaua -5'
32083 5' -51.8 NC_007016.1 + 22714 0.67 0.958032
Target:  5'- -gCCGGUGGugGCGUCGGcaaaaAUAg -3'
miRNA:   3'- caGGUUACCugCGCGGCCaaag-UAUa -5'
32083 5' -51.8 NC_007016.1 + 29149 0.67 0.954017
Target:  5'- -aCCAAUGGAaccuuCGCGCCGGccuaUCGg-- -3'
miRNA:   3'- caGGUUACCU-----GCGCGGCCaa--AGUaua -5'
32083 5' -51.8 NC_007016.1 + 73456 0.67 0.954017
Target:  5'- aGUCCGuuUGGACGCGUgGGaugUCGg-- -3'
miRNA:   3'- -CAGGUu-ACCUGCGCGgCCaa-AGUaua -5'
32083 5' -51.8 NC_007016.1 + 38385 0.67 0.94476
Target:  5'- cUCCAguuuggcGUGGACGCGCUGGa------- -3'
miRNA:   3'- cAGGU-------UACCUGCGCGGCCaaaguaua -5'
32083 5' -51.8 NC_007016.1 + 118869 0.68 0.935401
Target:  5'- --gCGggGGGCGCGCCGGUUg----- -3'
miRNA:   3'- cagGUuaCCUGCGCGGCCAAaguaua -5'
32083 5' -51.8 NC_007016.1 + 80882 0.68 0.935401
Target:  5'- cUCCuGUGcGCGCGaCCGGUUUUGUGa -3'
miRNA:   3'- cAGGuUACcUGCGC-GGCCAAAGUAUa -5'
32083 5' -51.8 NC_007016.1 + 23016 0.71 0.820199
Target:  5'- -gCCAAUGGGCGCGuuGgGUUUUGUu- -3'
miRNA:   3'- caGGUUACCUGCGCggC-CAAAGUAua -5'
32083 5' -51.8 NC_007016.1 + 100637 0.71 0.811084
Target:  5'- cUCCAuUGGAUaUGCCGGUUUCGg-- -3'
miRNA:   3'- cAGGUuACCUGcGCGGCCAAAGUaua -5'
32083 5' -51.8 NC_007016.1 + 23137 1.06 0.008845
Target:  5'- cGUCCAAUGGACGCGCCGGUUUCAUAUu -3'
miRNA:   3'- -CAGGUUACCUGCGCGGCCAAAGUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.