miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32084 5' -52.9 NC_007016.1 + 18548 0.66 0.975663
Target:  5'- ---aUCGCCGUcGUGGACGA--CCACg -3'
miRNA:   3'- gguaGGCGGCA-CGCUUGCUuuGGUGa -5'
32084 5' -52.9 NC_007016.1 + 120140 0.66 0.975663
Target:  5'- ---aCCGCCGUGCGGugcucucuGCGGuuuACgGCg -3'
miRNA:   3'- gguaGGCGGCACGCU--------UGCUu--UGgUGa -5'
32084 5' -52.9 NC_007016.1 + 19795 0.66 0.975406
Target:  5'- aCCggCCGCCGcccgcgauUGUGAGCGAguaauuuAACCGg- -3'
miRNA:   3'- -GGuaGGCGGC--------ACGCUUGCU-------UUGGUga -5'
32084 5' -52.9 NC_007016.1 + 87205 0.67 0.956471
Target:  5'- cCUGUCCGCUcUGC-AACGAAgcggauGCCACg -3'
miRNA:   3'- -GGUAGGCGGcACGcUUGCUU------UGGUGa -5'
32084 5' -52.9 NC_007016.1 + 50402 0.67 0.955692
Target:  5'- aCGUCC-CCGagacgagcaaugGCGAGCGcAACCGCg -3'
miRNA:   3'- gGUAGGcGGCa-----------CGCUUGCuUUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 122789 0.68 0.93412
Target:  5'- cCCGUCCGgUGacGUGAugGcgGCCACg -3'
miRNA:   3'- -GGUAGGCgGCa-CGCUugCuuUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 23055 0.68 0.93412
Target:  5'- uCCucUCCGCCGUGauuGACGu--CCGCUg -3'
miRNA:   3'- -GGu-AGGCGGCACgc-UUGCuuuGGUGA- -5'
32084 5' -52.9 NC_007016.1 + 123621 0.68 0.917757
Target:  5'- gCUAUuuGCgGUGCcguCGAGGCCACc -3'
miRNA:   3'- -GGUAggCGgCACGcuuGCUUUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 120275 0.69 0.899169
Target:  5'- -uGUCCGCCGcgGCGGu--GAGCCGCg -3'
miRNA:   3'- ggUAGGCGGCa-CGCUugcUUUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 76670 0.69 0.899169
Target:  5'- gCCG-CCGCCGcUGCGAcccgagguguucACGGAucgacagcucACCGCUa -3'
miRNA:   3'- -GGUaGGCGGC-ACGCU------------UGCUU----------UGGUGA- -5'
32084 5' -52.9 NC_007016.1 + 120123 0.69 0.878419
Target:  5'- uCCGuUCCGCCGcGCaGcGCGcgGCCGCUg -3'
miRNA:   3'- -GGU-AGGCGGCaCG-CuUGCuuUGGUGA- -5'
32084 5' -52.9 NC_007016.1 + 18135 0.7 0.87104
Target:  5'- ---cCCGUCcUGuCGGACGAGACCGCg -3'
miRNA:   3'- gguaGGCGGcAC-GCUUGCUUUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 84236 0.7 0.84759
Target:  5'- gCCAUCUGCCG-GCGAcccgUGGggUCACa -3'
miRNA:   3'- -GGUAGGCGGCaCGCUu---GCUuuGGUGa -5'
32084 5' -52.9 NC_007016.1 + 129891 0.71 0.83093
Target:  5'- cCCAggcgCCcgGCCGgcgGCGGcGCGggGCCGCg -3'
miRNA:   3'- -GGUa---GG--CGGCa--CGCU-UGCuuUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 10960 0.72 0.786142
Target:  5'- aCCGUCUaUCGaggGUGGACGAGACCGCc -3'
miRNA:   3'- -GGUAGGcGGCa--CGCUUGCUUUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 17893 0.72 0.767155
Target:  5'- aUCGUacCCGCCGUGguCGAGCGcgcGGACCGCg -3'
miRNA:   3'- -GGUA--GGCGGCAC--GCUUGC---UUUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 71179 0.76 0.531892
Target:  5'- aCAUCCGCguggaCGUGUcgauGGACGAGACCACc -3'
miRNA:   3'- gGUAGGCG-----GCACG----CUUGCUUUGGUGa -5'
32084 5' -52.9 NC_007016.1 + 82259 0.76 0.531892
Target:  5'- gCCAUgCGCCGUGC-AACGggGCaaCACUg -3'
miRNA:   3'- -GGUAgGCGGCACGcUUGCuuUG--GUGA- -5'
32084 5' -52.9 NC_007016.1 + 25938 1.11 0.004341
Target:  5'- cCCAUCCGCCGUGCGAACGAAACCACUg -3'
miRNA:   3'- -GGUAGGCGGCACGCUUGCUUUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.