Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32085 | 3' | -55.6 | NC_007016.1 | + | 67560 | 0.68 | 0.808406 |
Target: 5'- gUCGUgACUGGAAGUaCuAGCGGGAUGa -3' miRNA: 3'- -AGCGgUGGUCUUCGcGuUUGCCCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 55102 | 0.68 | 0.808406 |
Target: 5'- aCGCC-CgGGAGGUgGCAcucACGGGACa -3' miRNA: 3'- aGCGGuGgUCUUCG-CGUu--UGCCCUGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 30649 | 0.68 | 0.799436 |
Target: 5'- cCGUCAgaugcgggaUCGGAAGCcUAGAUGGGACGa -3' miRNA: 3'- aGCGGU---------GGUCUUCGcGUUUGCCCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 59915 | 0.68 | 0.799436 |
Target: 5'- aUCGCCGUCAGAaaAGCGCAucaGACcGGAgCGg -3' miRNA: 3'- -AGCGGUGGUCU--UCGCGU---UUGcCCU-GC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 16719 | 0.68 | 0.789392 |
Target: 5'- gUCGCCGCCGGAaucccguGGgGCGAugaGGGccACGc -3' miRNA: 3'- -AGCGGUGGUCU-------UCgCGUUug-CCC--UGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 40892 | 0.69 | 0.784768 |
Target: 5'- cCGCCACCAGggGaucgcuguacagcuuCGUGAACGGcACc -3' miRNA: 3'- aGCGGUGGUCuuC---------------GCGUUUGCCcUGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 8078 | 0.69 | 0.771638 |
Target: 5'- gUCGaCCGCCuGAuaaAGCGagccGCGGGACa -3' miRNA: 3'- -AGC-GGUGGuCU---UCGCguu-UGCCCUGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 12923 | 0.69 | 0.77069 |
Target: 5'- cUCGCCggcaugcACCAGcuacaacaggaaGAGCGUAGGCGGuuaGACGa -3' miRNA: 3'- -AGCGG-------UGGUC------------UUCGCGUUUGCC---CUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 16113 | 0.69 | 0.763064 |
Target: 5'- cUCGCCagcuucugguacaccGCCAGGuggggcagguugguGGUcuuguaaucGCAGACGGGGCGg -3' miRNA: 3'- -AGCGG---------------UGGUCU--------------UCG---------CGUUUGCCCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 129925 | 0.69 | 0.762106 |
Target: 5'- -gGCCGCCAucuuGCGCc--CGGGGCGa -3' miRNA: 3'- agCGGUGGUcuu-CGCGuuuGCCCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 17272 | 0.69 | 0.752456 |
Target: 5'- -gGCCGCCGGuguGgGUggGCaGGACGg -3' miRNA: 3'- agCGGUGGUCuu-CgCGuuUGcCCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 103528 | 0.69 | 0.742699 |
Target: 5'- aCGCCGCggggCAGAGGcCGCA-ACGuGGAUGg -3' miRNA: 3'- aGCGGUG----GUCUUC-GCGUuUGC-CCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 13327 | 0.69 | 0.732843 |
Target: 5'- cCGCCuGCCuccGAacgccgGGgGCAGGCGGGAUGa -3' miRNA: 3'- aGCGG-UGGu--CU------UCgCGUUUGCCCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 80284 | 0.7 | 0.722898 |
Target: 5'- cUCGCUAUCGGAccgAGCuGCAGuuacuuuguuccACGGGACc -3' miRNA: 3'- -AGCGGUGGUCU---UCG-CGUU------------UGCCCUGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 125409 | 0.7 | 0.712874 |
Target: 5'- -aGCCACCuGGGAGCcCuggucucGCGGGGCGg -3' miRNA: 3'- agCGGUGG-UCUUCGcGuu-----UGCCCUGC- -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 93619 | 0.7 | 0.712874 |
Target: 5'- gCGCCACCucuGGCGCAAACaGGuGCc -3' miRNA: 3'- aGCGGUGGucuUCGCGUUUGcCC-UGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 130044 | 0.7 | 0.682419 |
Target: 5'- cCGCCGCCGGccGGGCGCcug-GGGGCc -3' miRNA: 3'- aGCGGUGGUC--UUCGCGuuugCCCUGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 115968 | 0.7 | 0.682419 |
Target: 5'- uUUGCCGCCcGggGuCGCcGGCGGGuCa -3' miRNA: 3'- -AGCGGUGGuCuuC-GCGuUUGCCCuGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 56543 | 0.71 | 0.64126 |
Target: 5'- gUCGUgACCcgucuuGAGGCGCAGuUGGGACu -3' miRNA: 3'- -AGCGgUGGu-----CUUCGCGUUuGCCCUGc -5' |
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32085 | 3' | -55.6 | NC_007016.1 | + | 72475 | 0.71 | 0.620602 |
Target: 5'- uUUGCCGCCAGuccaGAGCGCcccacgauuAGUGGGACGu -3' miRNA: 3'- -AGCGGUGGUC----UUCGCGu--------UUGCCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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