miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32085 5' -57.1 NC_007016.1 + 18464 0.66 0.868917
Target:  5'- gCCGuuACGGGgCCGUcggugcgauuGUUUCCGGGgGGc -3'
miRNA:   3'- aGGC--UGCUCgGGCA----------CAAAGGUCCgCU- -5'
32085 5' -57.1 NC_007016.1 + 73085 0.66 0.868917
Target:  5'- gCCGACGAGaCCGUGUcacUCCuGGa-- -3'
miRNA:   3'- aGGCUGCUCgGGCACAa--AGGuCCgcu -5'
32085 5' -57.1 NC_007016.1 + 105350 0.66 0.852193
Target:  5'- uUCCGACGuuugagauauuAGUCgaggcaccgucugCGUGUUuaauuucUCCGGGCGAg -3'
miRNA:   3'- -AGGCUGC-----------UCGG-------------GCACAA-------AGGUCCGCU- -5'
32085 5' -57.1 NC_007016.1 + 62230 0.66 0.845871
Target:  5'- aUCCGugGcGCCCGUGcccUCaucGGCGu -3'
miRNA:   3'- -AGGCugCuCGGGCACaa-AGgu-CCGCu -5'
32085 5' -57.1 NC_007016.1 + 125070 0.66 0.837795
Target:  5'- aUCCaACGGGCCCGg--UUCC-GGCu- -3'
miRNA:   3'- -AGGcUGCUCGGGCacaAAGGuCCGcu -5'
32085 5' -57.1 NC_007016.1 + 99891 0.66 0.828699
Target:  5'- aCgGGCGAGCCguccgagaagcggCGgcccUCCAGGCGAu -3'
miRNA:   3'- aGgCUGCUCGG-------------GCacaaAGGUCCGCU- -5'
32085 5' -57.1 NC_007016.1 + 114114 0.67 0.803719
Target:  5'- cCCgGugGGGCUCcggGUGgcUCCGGGUGGg -3'
miRNA:   3'- aGG-CugCUCGGG---CACaaAGGUCCGCU- -5'
32085 5' -57.1 NC_007016.1 + 10188 0.69 0.699019
Target:  5'- gUCGuGCuGGCCCaGUGUUUCgAGGCGGc -3'
miRNA:   3'- aGGC-UGcUCGGG-CACAAAGgUCCGCU- -5'
32085 5' -57.1 NC_007016.1 + 96499 0.7 0.658643
Target:  5'- gUUCGugGuGGCCgGUGa--CCAGGCGAc -3'
miRNA:   3'- -AGGCugC-UCGGgCACaaaGGUCCGCU- -5'
32085 5' -57.1 NC_007016.1 + 39936 0.7 0.658643
Target:  5'- uUuuGGCGAGCUCGuUGUUUUgcaaCAGGCGc -3'
miRNA:   3'- -AggCUGCUCGGGC-ACAAAG----GUCCGCu -5'
32085 5' -57.1 NC_007016.1 + 130172 0.74 0.41604
Target:  5'- gCCG-CGGGCCCGggccggCCGGGCGGa -3'
miRNA:   3'- aGGCuGCUCGGGCacaaa-GGUCCGCU- -5'
32085 5' -57.1 NC_007016.1 + 19209 0.76 0.305149
Target:  5'- gCCGAUGGccgcggcGCCCGcGUUUCCGGGCGc -3'
miRNA:   3'- aGGCUGCU-------CGGGCaCAAAGGUCCGCu -5'
32085 5' -57.1 NC_007016.1 + 26712 1.09 0.002001
Target:  5'- uUCCGACGAGCCCGUGUUUCCAGGCGAg -3'
miRNA:   3'- -AGGCUGCUCGGGCACAAAGGUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.