miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32086 3' -56.2 NC_007016.1 + 113527 0.67 0.823743
Target:  5'- cCGGUGGgGUgcagGUCCCcCGgugGGGUGCa -3'
miRNA:   3'- uGCCGCCgCA----UAGGGaGCa--CCUAUGg -5'
32086 3' -56.2 NC_007016.1 + 26313 0.68 0.788462
Target:  5'- uACGGCugugaGGCGUggagauggguGUCCgUUCcUGGAUACCa -3'
miRNA:   3'- -UGCCG-----CCGCA----------UAGG-GAGcACCUAUGG- -5'
32086 3' -56.2 NC_007016.1 + 29747 0.68 0.788462
Target:  5'- uCGGCGGUu--UCCCUgGUcGGggACCg -3'
miRNA:   3'- uGCCGCCGcauAGGGAgCA-CCuaUGG- -5'
32086 3' -56.2 NC_007016.1 + 85731 0.69 0.750941
Target:  5'- uCGGUGGCGUGaguUCCCUCaa--GUACCu -3'
miRNA:   3'- uGCCGCCGCAU---AGGGAGcaccUAUGG- -5'
32086 3' -56.2 NC_007016.1 + 42411 0.69 0.73152
Target:  5'- cACGGCGaGCGUgcauuGUCCagauaGUGGuAUGCCu -3'
miRNA:   3'- -UGCCGC-CGCA-----UAGGgag--CACC-UAUGG- -5'
32086 3' -56.2 NC_007016.1 + 117713 0.7 0.67149
Target:  5'- cCGGCgGGCuuuccccGUCCCUgGUGGcgGCCg -3'
miRNA:   3'- uGCCG-CCGca-----UAGGGAgCACCuaUGG- -5'
32086 3' -56.2 NC_007016.1 + 78371 0.71 0.640923
Target:  5'- aGCGGCGGaguGUGUUCCUCG-GGuaacgcaACCg -3'
miRNA:   3'- -UGCCGCCg--CAUAGGGAGCaCCua-----UGG- -5'
32086 3' -56.2 NC_007016.1 + 130232 0.71 0.620497
Target:  5'- cGCGGCGcGCGgcUCCCgaugcCG-GGcgGCCg -3'
miRNA:   3'- -UGCCGC-CGCauAGGGa----GCaCCuaUGG- -5'
32086 3' -56.2 NC_007016.1 + 17528 0.74 0.461858
Target:  5'- gGCGGCGGCcaccaggGUGUCUCuuuuuauagUCGUGGGggUACCg -3'
miRNA:   3'- -UGCCGCCG-------CAUAGGG---------AGCACCU--AUGG- -5'
32086 3' -56.2 NC_007016.1 + 26910 1.12 0.001677
Target:  5'- aACGGCGGCGUAUCCCUCGUGGAUACCg -3'
miRNA:   3'- -UGCCGCCGCAUAGGGAGCACCUAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.