miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32087 3' -61.6 NC_007016.1 + 55874 0.68 0.524408
Target:  5'- aGCGCCaACGUUAacuacguGUgUCCGggGGCCa -3'
miRNA:   3'- gCGCGG-UGUAGU-------CGgGGGCuuCCGGc -5'
32087 3' -61.6 NC_007016.1 + 126492 0.68 0.515838
Target:  5'- aGgGCCGCggCGGCCCagCGAGGGUUc -3'
miRNA:   3'- gCgCGGUGuaGUCGGGg-GCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 59296 0.68 0.515837
Target:  5'- gGUGCCAauCGUCAggcgcGCCCCCGAcGGUg- -3'
miRNA:   3'- gCGCGGU--GUAGU-----CGGGGGCUuCCGgc -5'
32087 3' -61.6 NC_007016.1 + 130371 0.68 0.515837
Target:  5'- gCGCGCCGCGgcuuguggGGCCCCgggcuCGggGGgCGu -3'
miRNA:   3'- -GCGCGGUGUag------UCGGGG-----GCuuCCgGC- -5'
32087 3' -61.6 NC_007016.1 + 16734 0.68 0.505441
Target:  5'- gCGCGCCGCGUCcGCgucgccgccggaaUCCCGuggggcgaugAGGGCCa -3'
miRNA:   3'- -GCGCGGUGUAGuCG-------------GGGGC----------UUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 84617 0.68 0.494203
Target:  5'- --aGCCACugucggcuuuggauAUCAGCcauuCCCUGAGGGCCa -3'
miRNA:   3'- gcgCGGUG--------------UAGUCG----GGGGCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 29823 0.68 0.486775
Target:  5'- aCGCGUuuguuguCACGaUAGCCCCCGGAGacCCGg -3'
miRNA:   3'- -GCGCG-------GUGUaGUCGGGGGCUUCc-GGC- -5'
32087 3' -61.6 NC_007016.1 + 124357 0.68 0.486775
Target:  5'- aGCGCCacgcaacaGCAUCagacgguGGCCCCCGu--GCCGu -3'
miRNA:   3'- gCGCGG--------UGUAG-------UCGGGGGCuucCGGC- -5'
32087 3' -61.6 NC_007016.1 + 130518 0.68 0.478481
Target:  5'- uCGCGCCcCGgggcCGGCCCCgcCGAGGcGCCc -3'
miRNA:   3'- -GCGCGGuGUa---GUCGGGG--GCUUC-CGGc -5'
32087 3' -61.6 NC_007016.1 + 130189 0.69 0.469349
Target:  5'- gGCGCCGCGccccgaCGcCCCCCGAgcccgGGGCCc -3'
miRNA:   3'- gCGCGGUGUa-----GUcGGGGGCU-----UCCGGc -5'
32087 3' -61.6 NC_007016.1 + 129957 0.69 0.451358
Target:  5'- cCGCGCgGCccccgGGCCCCCGAgcggGGcGCCGc -3'
miRNA:   3'- -GCGCGgUGuag--UCGGGGGCU----UC-CGGC- -5'
32087 3' -61.6 NC_007016.1 + 130120 0.69 0.442505
Target:  5'- gGCGCCcCGcUCGGgggCCCGggGGCCGc -3'
miRNA:   3'- gCGCGGuGU-AGUCgg-GGGCuuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 130010 0.69 0.442505
Target:  5'- gGCGCCGCcgCuaggGGCCCUCGccuGGcGCCGc -3'
miRNA:   3'- gCGCGGUGuaG----UCGGGGGCu--UC-CGGC- -5'
32087 3' -61.6 NC_007016.1 + 130059 0.69 0.432882
Target:  5'- cCGCGCCGCGcgccgggccgcuuUCGGUUCgCGG-GGCCGg -3'
miRNA:   3'- -GCGCGGUGU-------------AGUCGGGgGCUuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 130357 0.69 0.425099
Target:  5'- gGCGCCucgGCGgggcCGGCCCcggggcgcgaCCGAGGGCCc -3'
miRNA:   3'- gCGCGG---UGUa---GUCGGG----------GGCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 129874 0.69 0.425099
Target:  5'- gGCGCCcgGCGggGGCCCCCaGGcgcccGGCCGg -3'
miRNA:   3'- gCGCGG--UGUagUCGGGGG-CUu----CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 20863 0.7 0.41655
Target:  5'- cCGCGgCGCGU--GCCCCgGAcGGCCGc -3'
miRNA:   3'- -GCGCgGUGUAguCGGGGgCUuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 41003 0.7 0.408107
Target:  5'- uGUGCCACuccucguacUCGGCCa-UGAGGGCCGg -3'
miRNA:   3'- gCGCGGUGu--------AGUCGGggGCUUCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 116551 0.7 0.391546
Target:  5'- cCGCGCCAg--CGGCCCUucgcguugCGggGGUCGu -3'
miRNA:   3'- -GCGCGGUguaGUCGGGG--------GCuuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 88243 0.71 0.367541
Target:  5'- cCGCGCCGCAccacUAGCCUCCGccggagcuuGAGGCgGu -3'
miRNA:   3'- -GCGCGGUGUa---GUCGGGGGC---------UUCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.