Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32090 | 5' | -54.8 | NC_007016.1 | + | 29653 | 0.66 | 0.91693 |
Target: 5'- gAAGCCcGGGUCUCCG---GGGGCUa- -3' miRNA: 3'- -UUUGGuCCUAGAGGCagaCCUCGAgg -5' |
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32090 | 5' | -54.8 | NC_007016.1 | + | 130306 | 0.66 | 0.904649 |
Target: 5'- cGGACCGGGGcgCUCCcgggaGUCggcGGGGC-CCg -3' miRNA: 3'- -UUUGGUCCUa-GAGG-----CAGa--CCUCGaGG- -5' |
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32090 | 5' | -54.8 | NC_007016.1 | + | 114102 | 0.66 | 0.898139 |
Target: 5'- gGGugCAGG-UCccCCGg-UGGGGCUCCg -3' miRNA: 3'- -UUugGUCCuAGa-GGCagACCUCGAGG- -5' |
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32090 | 5' | -54.8 | NC_007016.1 | + | 104077 | 0.67 | 0.884395 |
Target: 5'- aAGGCCAGGGUggcggCCGUCaccUGGGcGCUCa -3' miRNA: 3'- -UUUGGUCCUAga---GGCAG---ACCU-CGAGg -5' |
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32090 | 5' | -54.8 | NC_007016.1 | + | 6792 | 0.67 | 0.877168 |
Target: 5'- --cCCAGGAUCUCCagGUCguuaaaGGUUCCg -3' miRNA: 3'- uuuGGUCCUAGAGG--CAGacc---UCGAGG- -5' |
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32090 | 5' | -54.8 | NC_007016.1 | + | 104431 | 0.68 | 0.802585 |
Target: 5'- uGGGCCAGGcgCgcggCGgcaUGGGGCUCCu -3' miRNA: 3'- -UUUGGUCCuaGag--GCag-ACCUCGAGG- -5' |
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32090 | 5' | -54.8 | NC_007016.1 | + | 77263 | 0.7 | 0.745231 |
Target: 5'- uAGACCGGGAga--UGUCaUGGGGCUCUu -3' miRNA: 3'- -UUUGGUCCUagagGCAG-ACCUCGAGG- -5' |
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32090 | 5' | -54.8 | NC_007016.1 | + | 29778 | 1.09 | 0.002812 |
Target: 5'- uAAACCAGGAUCUCCGUCUGGAGCUCCu -3' miRNA: 3'- -UUUGGUCCUAGAGGCAGACCUCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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