miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32091 5' -50.2 NC_007016.1 + 27564 0.66 0.994553
Target:  5'- -cGAGCC-CCGAUuuuuugGCCCuGGCGUCAc -3'
miRNA:   3'- ccUUUGGcGGCUA------UGGGuUUGCAGUu -5'
32091 5' -50.2 NC_007016.1 + 44953 0.66 0.994553
Target:  5'- cGgcACUGCCGcGUACCagauAGCGUCAu -3'
miRNA:   3'- cCuuUGGCGGC-UAUGGgu--UUGCAGUu -5'
32091 5' -50.2 NC_007016.1 + 90430 0.66 0.994553
Target:  5'- cGGAAGgUGCCGAU-CCCGAGgGg--- -3'
miRNA:   3'- -CCUUUgGCGGCUAuGGGUUUgCaguu -5'
32091 5' -50.2 NC_007016.1 + 123370 0.66 0.994553
Target:  5'- uGGAGACgGCCGcgacgucgaACCC-GACGUUAGu -3'
miRNA:   3'- -CCUUUGgCGGCua-------UGGGuUUGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 124437 0.66 0.994553
Target:  5'- aGGAACUauGCCGggACCUGAGCGUa-- -3'
miRNA:   3'- cCUUUGG--CGGCuaUGGGUUUGCAguu -5'
32091 5' -50.2 NC_007016.1 + 16057 0.66 0.99367
Target:  5'- -cGGACCugGCCGAacACCCGGauuACGUCAAa -3'
miRNA:   3'- ccUUUGG--CGGCUa-UGGGUU---UGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 29764 0.66 0.99367
Target:  5'- cGGGGACCGCaGAUcCCCGAccAUGUUu- -3'
miRNA:   3'- -CCUUUGGCGgCUAuGGGUU--UGCAGuu -5'
32091 5' -50.2 NC_007016.1 + 28462 0.66 0.992676
Target:  5'- cGGAAuGCCGUgGAccGCgCGAACGUCGc -3'
miRNA:   3'- -CCUU-UGGCGgCUa-UGgGUUUGCAGUu -5'
32091 5' -50.2 NC_007016.1 + 28150 0.66 0.992676
Target:  5'- uGGggGCaCGCCGAccacgaGCCCu-GgGUCAGg -3'
miRNA:   3'- -CCuuUG-GCGGCUa-----UGGGuuUgCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 126321 0.66 0.992676
Target:  5'- aGGAGCUGCCaGAUaacGCCC-AGCGUUGGg -3'
miRNA:   3'- cCUUUGGCGG-CUA---UGGGuUUGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 17644 0.66 0.990316
Target:  5'- gGGAGACCGaCCGGgaUugUgAAcGCGUCAAu -3'
miRNA:   3'- -CCUUUGGC-GGCU--AugGgUU-UGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 102295 0.66 0.990316
Target:  5'- cGGAGGCCGCgGcGUACaCGGACG-CAAu -3'
miRNA:   3'- -CCUUUGGCGgC-UAUGgGUUUGCaGUU- -5'
32091 5' -50.2 NC_007016.1 + 6624 0.66 0.990316
Target:  5'- cGGAACCGCCGGaACCUuuAACGa--- -3'
miRNA:   3'- cCUUUGGCGGCUaUGGGu-UUGCaguu -5'
32091 5' -50.2 NC_007016.1 + 5753 0.66 0.990316
Target:  5'- aGGAuGCCGCgGuuuUACCauaaAGACGUUAGc -3'
miRNA:   3'- -CCUuUGGCGgCu--AUGGg---UUUGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 681 0.66 0.990316
Target:  5'- -aGGACCGCCGGgcaagcgGCCCAGAUcugcccggcagGUCGc -3'
miRNA:   3'- ccUUUGGCGGCUa------UGGGUUUG-----------CAGUu -5'
32091 5' -50.2 NC_007016.1 + 104591 0.66 0.990316
Target:  5'- aGGAGccccauGCCGCCGcgcgccugGCCCAGGCGc--- -3'
miRNA:   3'- -CCUU------UGGCGGCua------UGGGUUUGCaguu -5'
32091 5' -50.2 NC_007016.1 + 91052 0.67 0.988932
Target:  5'- cGGAGACCGagGAcGCCC--GCGUCu- -3'
miRNA:   3'- -CCUUUGGCggCUaUGGGuuUGCAGuu -5'
32091 5' -50.2 NC_007016.1 + 106472 0.67 0.985705
Target:  5'- cGGcu-CCGCCGc--CCCGAGCGUUg- -3'
miRNA:   3'- -CCuuuGGCGGCuauGGGUUUGCAGuu -5'
32091 5' -50.2 NC_007016.1 + 84780 0.67 0.985705
Target:  5'- aGGGAAUgGCUGAUAUCCAAAgcCGaCAGu -3'
miRNA:   3'- -CCUUUGgCGGCUAUGGGUUU--GCaGUU- -5'
32091 5' -50.2 NC_007016.1 + 90532 0.67 0.985705
Target:  5'- aGGGccuGCCGCUGAcagauaGCCUugcuGACGUCAAg -3'
miRNA:   3'- -CCUu--UGGCGGCUa-----UGGGu---UUGCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.