miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32091 5' -50.2 NC_007016.1 + 116332 0.72 0.854679
Target:  5'- gGGAGGCgCGCCGGUACgCCGcuuGCGUgAGu -3'
miRNA:   3'- -CCUUUG-GCGGCUAUG-GGUu--UGCAgUU- -5'
32091 5' -50.2 NC_007016.1 + 123370 0.66 0.994553
Target:  5'- uGGAGACgGCCGcgacgucgaACCC-GACGUUAGu -3'
miRNA:   3'- -CCUUUGgCGGCua-------UGGGuUUGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 16057 0.66 0.99367
Target:  5'- -cGGACCugGCCGAacACCCGGauuACGUCAAa -3'
miRNA:   3'- ccUUUGG--CGGCUa-UGGGUU---UGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 29764 0.66 0.99367
Target:  5'- cGGGGACCGCaGAUcCCCGAccAUGUUu- -3'
miRNA:   3'- -CCUUUGGCGgCUAuGGGUU--UGCAGuu -5'
32091 5' -50.2 NC_007016.1 + 28150 0.66 0.992676
Target:  5'- uGGggGCaCGCCGAccacgaGCCCu-GgGUCAGg -3'
miRNA:   3'- -CCuuUG-GCGGCUa-----UGGGuuUgCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 126321 0.66 0.992676
Target:  5'- aGGAGCUGCCaGAUaacGCCC-AGCGUUGGg -3'
miRNA:   3'- cCUUUGGCGG-CUA---UGGGuUUGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 102295 0.66 0.990316
Target:  5'- cGGAGGCCGCgGcGUACaCGGACG-CAAu -3'
miRNA:   3'- -CCUUUGGCGgC-UAUGgGUUUGCaGUU- -5'
32091 5' -50.2 NC_007016.1 + 6624 0.66 0.990316
Target:  5'- cGGAACCGCCGGaACCUuuAACGa--- -3'
miRNA:   3'- cCUUUGGCGGCUaUGGGu-UUGCaguu -5'
32091 5' -50.2 NC_007016.1 + 5753 0.66 0.990316
Target:  5'- aGGAuGCCGCgGuuuUACCauaaAGACGUUAGc -3'
miRNA:   3'- -CCUuUGGCGgCu--AUGGg---UUUGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 681 0.66 0.990316
Target:  5'- -aGGACCGCCGGgcaagcgGCCCAGAUcugcccggcagGUCGc -3'
miRNA:   3'- ccUUUGGCGGCUa------UGGGUUUG-----------CAGUu -5'
32091 5' -50.2 NC_007016.1 + 91052 0.67 0.988932
Target:  5'- cGGAGACCGagGAcGCCC--GCGUCu- -3'
miRNA:   3'- -CCUUUGGCggCUaUGGGuuUGCAGuu -5'
32091 5' -50.2 NC_007016.1 + 51080 0.72 0.870617
Target:  5'- cGGAcugGACCGCCG-UGCUCGGACG-CGg -3'
miRNA:   3'- -CCU---UUGGCGGCuAUGGGUUUGCaGUu -5'
32091 5' -50.2 NC_007016.1 + 125401 0.7 0.940445
Target:  5'- aGAGAgCGCUGGUugCCAucgcCGUCAAc -3'
miRNA:   3'- cCUUUgGCGGCUAugGGUuu--GCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 73091 0.69 0.958032
Target:  5'- ----cCCGCgGGUACCCuggccGCGUCAAa -3'
miRNA:   3'- ccuuuGGCGgCUAUGGGuu---UGCAGUU- -5'
32091 5' -50.2 NC_007016.1 + 115546 0.69 0.961801
Target:  5'- --uGACCGCCGGaugACCCcGGCGcCAAa -3'
miRNA:   3'- ccuUUGGCGGCUa--UGGGuUUGCaGUU- -5'
32091 5' -50.2 NC_007016.1 + 97847 0.69 0.961801
Target:  5'- aGGAAGCCGUuaucgCGuuaGCUCAAACGUCu- -3'
miRNA:   3'- -CCUUUGGCG-----GCua-UGGGUUUGCAGuu -5'
32091 5' -50.2 NC_007016.1 + 38701 0.68 0.979577
Target:  5'- cGGGAGa-GCCGAUugCCGGA-GUCAu -3'
miRNA:   3'- -CCUUUggCGGCUAugGGUUUgCAGUu -5'
32091 5' -50.2 NC_007016.1 + 16321 0.67 0.981804
Target:  5'- cGGAGACCGCCaccAUGCUgguuaaCGAGCuGUCGAu -3'
miRNA:   3'- -CCUUUGGCGGc--UAUGG------GUUUG-CAGUU- -5'
32091 5' -50.2 NC_007016.1 + 44953 0.66 0.994553
Target:  5'- cGgcACUGCCGcGUACCagauAGCGUCAu -3'
miRNA:   3'- cCuuUGGCGGC-UAUGGgu--UUGCAGUu -5'
32091 5' -50.2 NC_007016.1 + 123105 0.75 0.742825
Target:  5'- uGGGccAACgGCCGGUACCUggGCGUgAGa -3'
miRNA:   3'- -CCU--UUGgCGGCUAUGGGuuUGCAgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.