miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32092 3' -57.4 NC_007016.1 + 106868 0.66 0.847059
Target:  5'- gGCCuc-GCCGGACUgUgCgacCGGCCu -3'
miRNA:   3'- gCGGuuuCGGUCUGGgAgGaa-GCCGG- -5'
32092 3' -57.4 NC_007016.1 + 14839 0.66 0.838984
Target:  5'- gGCCGcGGCCAGGgauaacuuuaUCCUCC--CGGUCc -3'
miRNA:   3'- gCGGUuUCGGUCU----------GGGAGGaaGCCGG- -5'
32092 3' -57.4 NC_007016.1 + 103793 0.66 0.83072
Target:  5'- cCGCCAuguGGCCc-ACCCUgg--CGGCCg -3'
miRNA:   3'- -GCGGUu--UCGGucUGGGAggaaGCCGG- -5'
32092 3' -57.4 NC_007016.1 + 125223 0.66 0.83072
Target:  5'- aGCCGGAaCCGGGCCCguuggaugCCaUCagaagGGCCg -3'
miRNA:   3'- gCGGUUUcGGUCUGGGa-------GGaAG-----CCGG- -5'
32092 3' -57.4 NC_007016.1 + 9440 0.66 0.83072
Target:  5'- uGCCGAGGaCCGGACgCCgugCUgcgUGGCg -3'
miRNA:   3'- gCGGUUUC-GGUCUG-GGa--GGaa-GCCGg -5'
32092 3' -57.4 NC_007016.1 + 43687 0.66 0.822278
Target:  5'- -cCCAuaacAAGCCAGGCCg-CCUUUaacagGGCCa -3'
miRNA:   3'- gcGGU----UUCGGUCUGGgaGGAAG-----CCGG- -5'
32092 3' -57.4 NC_007016.1 + 15324 0.66 0.813662
Target:  5'- cCGCCAGGgugcGCCGGAUCgC-CCUUCGcuuuucuaGCCa -3'
miRNA:   3'- -GCGGUUU----CGGUCUGG-GaGGAAGC--------CGG- -5'
32092 3' -57.4 NC_007016.1 + 46726 0.66 0.813662
Target:  5'- -uCCAGAGCCAGGCg--UC-UCGGCCc -3'
miRNA:   3'- gcGGUUUCGGUCUGggaGGaAGCCGG- -5'
32092 3' -57.4 NC_007016.1 + 104186 0.66 0.813662
Target:  5'- aCGUCGAccuAGUCaAGACCCUacaccugaccaCCUUUGGUCc -3'
miRNA:   3'- -GCGGUU---UCGG-UCUGGGA-----------GGAAGCCGG- -5'
32092 3' -57.4 NC_007016.1 + 30182 0.66 0.804882
Target:  5'- aGCCAGGGCCucaccGACCagUUUUCGuGCCc -3'
miRNA:   3'- gCGGUUUCGGu----CUGGgaGGAAGC-CGG- -5'
32092 3' -57.4 NC_007016.1 + 27340 0.67 0.786863
Target:  5'- uCGCCGuuuacGGaCCAGACCCUaCCUg-GGUUg -3'
miRNA:   3'- -GCGGUu----UC-GGUCUGGGA-GGAagCCGG- -5'
32092 3' -57.4 NC_007016.1 + 97413 0.67 0.786863
Target:  5'- aCGCCAAAGaccuagccccuaUCAGACgCUCg-UUGGCCc -3'
miRNA:   3'- -GCGGUUUC------------GGUCUGgGAGgaAGCCGG- -5'
32092 3' -57.4 NC_007016.1 + 71720 0.67 0.785946
Target:  5'- cCGUCAuuuuaAAGCCGGcguucggcagacaACCCUCCacUUUGGCa -3'
miRNA:   3'- -GCGGU-----UUCGGUC-------------UGGGAGG--AAGCCGg -5'
32092 3' -57.4 NC_007016.1 + 130259 0.67 0.768288
Target:  5'- gGCCGccGCCcGGCauggcgguCCUCCgcCGGCCu -3'
miRNA:   3'- gCGGUuuCGGuCUG--------GGAGGaaGCCGG- -5'
32092 3' -57.4 NC_007016.1 + 91250 0.67 0.758815
Target:  5'- gGCCAGGGCaGGGCCCccgUCCUcagCGuGCUc -3'
miRNA:   3'- gCGGUUUCGgUCUGGG---AGGAa--GC-CGG- -5'
32092 3' -57.4 NC_007016.1 + 87411 0.68 0.738568
Target:  5'- gGCCAGacGGCCGguuuacacgaauuGACCCcgcgcgUCCUUCcGCCa -3'
miRNA:   3'- gCGGUU--UCGGU-------------CUGGG------AGGAAGcCGG- -5'
32092 3' -57.4 NC_007016.1 + 129937 0.68 0.709956
Target:  5'- gCGcCCGGGGCgAGGgUCUCCcgcgCGGCCc -3'
miRNA:   3'- -GC-GGUUUCGgUCUgGGAGGaa--GCCGG- -5'
32092 3' -57.4 NC_007016.1 + 130499 0.68 0.709956
Target:  5'- cCGCCGAGGCgcccCGGGCCCcagccccccUCCcggCGGCg -3'
miRNA:   3'- -GCGGUUUCG----GUCUGGG---------AGGaa-GCCGg -5'
32092 3' -57.4 NC_007016.1 + 130061 0.68 0.709956
Target:  5'- gCGCCGcgcGCCGGGCCg-CUUUCGGUUc -3'
miRNA:   3'- -GCGGUuu-CGGUCUGGgaGGAAGCCGG- -5'
32092 3' -57.4 NC_007016.1 + 48645 0.68 0.698946
Target:  5'- gGCCGuaacGCCAGACauggcguCCUCUaUCGGCa -3'
miRNA:   3'- gCGGUuu--CGGUCUG-------GGAGGaAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.