miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32092 5' -47 NC_007016.1 + 89940 0.66 0.9999
Target:  5'- gCGAGUgAuaaauaAAACACaaaauaaagggggaaGCCGCGACCg -3'
miRNA:   3'- -GCUUAgUuaca--UUUGUG---------------CGGCGCUGG- -5'
32092 5' -47 NC_007016.1 + 115793 0.66 0.999888
Target:  5'- aUGAGUacAUGUuucgguGACcCGCCGgCGACCc -3'
miRNA:   3'- -GCUUAguUACAu-----UUGuGCGGC-GCUGG- -5'
32092 5' -47 NC_007016.1 + 27648 0.66 0.999879
Target:  5'- uGggUCGGUGUuuGCGugaGCCGaaggagaugagcgcCGGCCu -3'
miRNA:   3'- gCuuAGUUACAuuUGUg--CGGC--------------GCUGG- -5'
32092 5' -47 NC_007016.1 + 15385 0.66 0.999854
Target:  5'- aCGGA-CAAccUGcGAACGCGCCucggucgcgagGUGACCg -3'
miRNA:   3'- -GCUUaGUU--ACaUUUGUGCGG-----------CGCUGG- -5'
32092 5' -47 NC_007016.1 + 50775 0.66 0.999811
Target:  5'- aGAGUUugacgcUGUGacgGACGCGguUCGCGACCu -3'
miRNA:   3'- gCUUAGuu----ACAU---UUGUGC--GGCGCUGG- -5'
32092 5' -47 NC_007016.1 + 112008 0.66 0.999811
Target:  5'- gGAAUCcaaa-GAACACGCC-CGAUCu -3'
miRNA:   3'- gCUUAGuuacaUUUGUGCGGcGCUGG- -5'
32092 5' -47 NC_007016.1 + 130073 0.66 0.999758
Target:  5'- gGGcgCAA---GAugGCgGCCGCGGCCc -3'
miRNA:   3'- gCUuaGUUacaUUugUG-CGGCGCUGG- -5'
32092 5' -47 NC_007016.1 + 38337 0.66 0.999758
Target:  5'- ---cUCGAUuacacaGAAUACGCCGgGGCCg -3'
miRNA:   3'- gcuuAGUUAca----UUUGUGCGGCgCUGG- -5'
32092 5' -47 NC_007016.1 + 30575 0.66 0.999758
Target:  5'- aGggUCGcggcGUGUuuACAUugauUCGCGACCg -3'
miRNA:   3'- gCuuAGU----UACAuuUGUGc---GGCGCUGG- -5'
32092 5' -47 NC_007016.1 + 16290 0.67 0.999691
Target:  5'- uGGAg-GAUGUuggcCGCGCCGUGcACCa -3'
miRNA:   3'- gCUUagUUACAuuu-GUGCGGCGC-UGG- -5'
32092 5' -47 NC_007016.1 + 115487 0.67 0.999691
Target:  5'- cCGAgccGUCAAUcaaaccGACGCGCgGCGGCg -3'
miRNA:   3'- -GCU---UAGUUAcau---UUGUGCGgCGCUGg -5'
32092 5' -47 NC_007016.1 + 20693 0.67 0.999509
Target:  5'- ---cUCGccGU--GCuCGCCGCGGCCg -3'
miRNA:   3'- gcuuAGUuaCAuuUGuGCGGCGCUGG- -5'
32092 5' -47 NC_007016.1 + 46291 0.67 0.999509
Target:  5'- --uGUgGAUGUAAAUgcuCGCCGCGAg- -3'
miRNA:   3'- gcuUAgUUACAUUUGu--GCGGCGCUgg -5'
32092 5' -47 NC_007016.1 + 126027 0.67 0.999387
Target:  5'- ----aCGGUGUccAGAUACGCCGUcauGGCCc -3'
miRNA:   3'- gcuuaGUUACA--UUUGUGCGGCG---CUGG- -5'
32092 5' -47 NC_007016.1 + 70705 0.67 0.999387
Target:  5'- gGggUaCGAU---AGCugGUCGUGACCg -3'
miRNA:   3'- gCuuA-GUUAcauUUGugCGGCGCUGG- -5'
32092 5' -47 NC_007016.1 + 74380 0.67 0.999387
Target:  5'- gGggUUg--GUAAACugGCCGUGGu- -3'
miRNA:   3'- gCuuAGuuaCAUUUGugCGGCGCUgg -5'
32092 5' -47 NC_007016.1 + 86481 0.67 0.999373
Target:  5'- gGAGUgGgaacgccuccuauGUGUAGAgACGCauagGCGGCCg -3'
miRNA:   3'- gCUUAgU-------------UACAUUUgUGCGg---CGCUGG- -5'
32092 5' -47 NC_007016.1 + 73345 0.67 0.999301
Target:  5'- aUGGG-CGAUGUGAGCAggcagagaugugcacCGCCGCccuccgacaGACCu -3'
miRNA:   3'- -GCUUaGUUACAUUUGU---------------GCGGCG---------CUGG- -5'
32092 5' -47 NC_007016.1 + 107308 0.67 0.999239
Target:  5'- gGAGUCAAccgagacggAGAUAUcCCGCGACCu -3'
miRNA:   3'- gCUUAGUUaca------UUUGUGcGGCGCUGG- -5'
32092 5' -47 NC_007016.1 + 47891 0.67 0.999239
Target:  5'- gCGggUCAAagacgGcgGAAUGCGCCGUGGUCg -3'
miRNA:   3'- -GCuuAGUUa----Ca-UUUGUGCGGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.