miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32093 5' -57.2 NC_007016.1 + 108690 0.66 0.835734
Target:  5'- -aCGCuaaagGCGGGGCGgucCCGGuGUGCAc -3'
miRNA:   3'- acGCGua---UGUCUCGCa--GGCC-CACGUc -5'
32093 5' -57.2 NC_007016.1 + 110130 0.66 0.827315
Target:  5'- cGaCGCAgaucucuCAGAaccggaccgGCGUCCGGGUggGCGGc -3'
miRNA:   3'- aC-GCGUau-----GUCU---------CGCAGGCCCA--CGUC- -5'
32093 5' -57.2 NC_007016.1 + 10061 0.66 0.825609
Target:  5'- cGCGCAUGCAGAGCGcguuugccaacaCCGcGcuuugcgucUGCAGa -3'
miRNA:   3'- aCGCGUAUGUCUCGCa-----------GGCcC---------ACGUC- -5'
32093 5' -57.2 NC_007016.1 + 9224 0.66 0.809944
Target:  5'- cGUGaCGUAUAG---GUCUGGGUGCGGg -3'
miRNA:   3'- aCGC-GUAUGUCucgCAGGCCCACGUC- -5'
32093 5' -57.2 NC_007016.1 + 9942 0.66 0.791917
Target:  5'- cGuCGCAUACGGcgaGGCGUCCGaGcUGguGa -3'
miRNA:   3'- aC-GCGUAUGUC---UCGCAGGC-CcACguC- -5'
32093 5' -57.2 NC_007016.1 + 71974 0.67 0.7638
Target:  5'- gUGCGCAUuuuuccucaGCGGAGCG-CCGacggaugaGGUGUAu -3'
miRNA:   3'- -ACGCGUA---------UGUCUCGCaGGC--------CCACGUc -5'
32093 5' -57.2 NC_007016.1 + 123417 0.67 0.754178
Target:  5'- aGCGCccuggggaGCGGGGCG-CCGGGgGCGa -3'
miRNA:   3'- aCGCGua------UGUCUCGCaGGCCCaCGUc -5'
32093 5' -57.2 NC_007016.1 + 11594 0.68 0.724691
Target:  5'- cGCGUuucgGUGguGGGCGUgCGGGUaGCGa -3'
miRNA:   3'- aCGCG----UAUguCUCGCAgGCCCA-CGUc -5'
32093 5' -57.2 NC_007016.1 + 17731 0.68 0.710666
Target:  5'- cUGUGCGUcACGGAGCGgucuccgugucugCCGGcGUGCc- -3'
miRNA:   3'- -ACGCGUA-UGUCUCGCa------------GGCC-CACGuc -5'
32093 5' -57.2 NC_007016.1 + 28915 0.69 0.632852
Target:  5'- gGCGCcgGUGGGGCGaUCUGGGUGUg- -3'
miRNA:   3'- aCGCGuaUGUCUCGC-AGGCCCACGuc -5'
32093 5' -57.2 NC_007016.1 + 130282 0.69 0.622531
Target:  5'- gGCGgGgcccgGCGGAGCGggacCCGGGgGCGGc -3'
miRNA:   3'- aCGCgUa----UGUCUCGCa---GGCCCaCGUC- -5'
32093 5' -57.2 NC_007016.1 + 90554 0.7 0.601917
Target:  5'- aGCGCAaguccACuuGGCGUCCGgGGUGuCAGg -3'
miRNA:   3'- aCGCGUa----UGucUCGCAGGC-CCAC-GUC- -5'
32093 5' -57.2 NC_007016.1 + 75235 0.7 0.560005
Target:  5'- gUGCGCGUACcccacugcuauaaGGuGgGUCCGGGUGgCGa -3'
miRNA:   3'- -ACGCGUAUG-------------UCuCgCAGGCCCAC-GUc -5'
32093 5' -57.2 NC_007016.1 + 115638 0.72 0.491594
Target:  5'- gUGCGCAUG-AGGGCGgCgGGGUcGCGGg -3'
miRNA:   3'- -ACGCGUAUgUCUCGCaGgCCCA-CGUC- -5'
32093 5' -57.2 NC_007016.1 + 130201 0.76 0.291755
Target:  5'- cGCGCGgcGCGGGGCGgCCGGGgGCGGc -3'
miRNA:   3'- aCGCGUa-UGUCUCGCaGGCCCaCGUC- -5'
32093 5' -57.2 NC_007016.1 + 30992 1.08 0.002029
Target:  5'- cUGCGCAUACAGAGCGUCCGGGUGCAGu -3'
miRNA:   3'- -ACGCGUAUGUCUCGCAGGCCCACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.